miRNA display CGI


Results 81 - 100 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 150682 0.66 0.670529
Target:  5'- cGGGCGcGGCgGUCGCC---CCGACGGAc -3'
miRNA:   3'- -UUCGC-UCGgCGGCGGgcuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 150543 0.68 0.520833
Target:  5'- -cGCGAGgguaCGCCGCCgCGACCuggGAgGGGa -3'
miRNA:   3'- uuCGCUCg---GCGGCGG-GCUGG---CUgCCU- -5'
9085 3' -64 NC_002512.2 + 150281 0.69 0.485098
Target:  5'- -cGCGAcccggcGCUGCCGCCCGcgaagaGGCGGAg -3'
miRNA:   3'- uuCGCU------CGGCGGCGGGCugg---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 150059 0.72 0.35151
Target:  5'- gGGGCGGgagggggggaccgccGCCGCCGCCguCGGgCGAUGGAg -3'
miRNA:   3'- -UUCGCU---------------CGGCGGCGG--GCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 149296 0.68 0.557549
Target:  5'- aGGGCGAGaucgucgaCCGCCGCgCGggcucGCCGcCGGAg -3'
miRNA:   3'- -UUCGCUC--------GGCGGCGgGC-----UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 149247 0.73 0.276055
Target:  5'- cGGCGccGCCGCCGCggaCGGCCGgACGGGu -3'
miRNA:   3'- uUCGCu-CGGCGGCGg--GCUGGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 149217 0.74 0.258478
Target:  5'- --cCGucGCCGCCGCCgcggGACCGACGGAc -3'
miRNA:   3'- uucGCu-CGGCGGCGGg---CUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 149008 0.69 0.467672
Target:  5'- cGGgGGGCCGCCGCggaCCGcCCGACa-- -3'
miRNA:   3'- uUCgCUCGGCGGCG---GGCuGGCUGccu -5'
9085 3' -64 NC_002512.2 + 148678 0.67 0.57619
Target:  5'- cAGCGGGCCGUgGCCCucgucGCCGcuucgccCGGAu -3'
miRNA:   3'- uUCGCUCGGCGgCGGGc----UGGCu------GCCU- -5'
9085 3' -64 NC_002512.2 + 148519 0.75 0.20177
Target:  5'- gAGGCG-GCCGCCGCCCGccCCGGCcgcgagGGAg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGCu-GGCUG------CCU- -5'
9085 3' -64 NC_002512.2 + 147850 0.69 0.459081
Target:  5'- -cGCGAccGCCGCCGgcgcgaccccgaCCCGGgCGACGGc -3'
miRNA:   3'- uuCGCU--CGGCGGC------------GGGCUgGCUGCCu -5'
9085 3' -64 NC_002512.2 + 146736 0.73 0.282122
Target:  5'- -cGCG-GCCGCCggGCCCGACgaccucgaCGACGGGg -3'
miRNA:   3'- uuCGCuCGGCGG--CGGGCUG--------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 145340 0.67 0.604393
Target:  5'- cGAGCGccucGCCgcGCCGCCCGacGCCGGCu-- -3'
miRNA:   3'- -UUCGCu---CGG--CGGCGGGC--UGGCUGccu -5'
9085 3' -64 NC_002512.2 + 145254 0.7 0.417445
Target:  5'- --cUGGGCCGCCGCCUGGaCGACGa- -3'
miRNA:   3'- uucGCUCGGCGGCGGGCUgGCUGCcu -5'
9085 3' -64 NC_002512.2 + 145095 0.68 0.548292
Target:  5'- -cGCGAGgCGUCGCggcugCCGGCCGACa-- -3'
miRNA:   3'- uuCGCUCgGCGGCG-----GGCUGGCUGccu -5'
9085 3' -64 NC_002512.2 + 143552 0.71 0.363203
Target:  5'- cGGCG-GCCGCgCGUCUccccgcgggcgGGCCGGCGGAg -3'
miRNA:   3'- uUCGCuCGGCG-GCGGG-----------CUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 142041 0.75 0.211209
Target:  5'- cGGCGAcccGCCGCgagggcccgaCGCCCGGCCGGgGGAu -3'
miRNA:   3'- uUCGCU---CGGCG----------GCGGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 141439 0.67 0.613837
Target:  5'- --aCGAGCCcCCGCUCGGuCCGACGu- -3'
miRNA:   3'- uucGCUCGGcGGCGGGCU-GGCUGCcu -5'
9085 3' -64 NC_002512.2 + 139990 0.66 0.632753
Target:  5'- -uGCGuggGGUCGCCGaCCCaGACCGAggcgcUGGAg -3'
miRNA:   3'- uuCGC---UCGGCGGC-GGG-CUGGCU-----GCCU- -5'
9085 3' -64 NC_002512.2 + 139257 0.69 0.493926
Target:  5'- cGGCGccgGGUcgCGCCGCCCGGCgCG-CGGGg -3'
miRNA:   3'- uUCGC---UCG--GCGGCGGGCUG-GCuGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.