miRNA display CGI


Results 101 - 120 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 138981 0.74 0.252826
Target:  5'- -cGCG-GCCGCCaGUCCGGCCGuccCGGAc -3'
miRNA:   3'- uuCGCuCGGCGG-CGGGCUGGCu--GCCU- -5'
9085 3' -64 NC_002512.2 + 137992 0.77 0.167604
Target:  5'- cGAGCGGgccgugcgccgcGCCGCCGCCCGcGCCgGACGGc -3'
miRNA:   3'- -UUCGCU------------CGGCGGCGGGC-UGG-CUGCCu -5'
9085 3' -64 NC_002512.2 + 137979 0.73 0.276055
Target:  5'- cGGCGcGCCGCCGCCCcaGGagaaGACGGAg -3'
miRNA:   3'- uUCGCuCGGCGGCGGG--CUgg--CUGCCU- -5'
9085 3' -64 NC_002512.2 + 137881 0.7 0.450575
Target:  5'- -cGCGAGuCCGCCGCCggCGAC--GCGGGa -3'
miRNA:   3'- uuCGCUC-GGCGGCGG--GCUGgcUGCCU- -5'
9085 3' -64 NC_002512.2 + 137798 0.7 0.433826
Target:  5'- cGGCGGGCCGCgCGUCCGGCgGcCGu- -3'
miRNA:   3'- uUCGCUCGGCG-GCGGGCUGgCuGCcu -5'
9085 3' -64 NC_002512.2 + 137289 0.66 0.667705
Target:  5'- -cGCGAccggccucgggaccGCCGCCccuCCCGGCCG-CGGc -3'
miRNA:   3'- uuCGCU--------------CGGCGGc--GGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 137265 0.7 0.409397
Target:  5'- cGGCG-GCCGCCGUCCGuCCGuCGu- -3'
miRNA:   3'- uUCGCuCGGCGGCGGGCuGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 137227 0.72 0.348629
Target:  5'- -cGCGGGCgGCCGuCCCGGauCCGcGCGGGu -3'
miRNA:   3'- uuCGCUCGgCGGC-GGGCU--GGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 136083 0.68 0.557549
Target:  5'- cGGCGuuccuGCUGCUGCUCGcGCUGGCGGc -3'
miRNA:   3'- uUCGCu----CGGCGGCGGGC-UGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 135212 0.66 0.642214
Target:  5'- cAGCGGGCCgggggGCCcCCCGGCCc-CGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGcGGGCUGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 134253 0.66 0.659222
Target:  5'- cGGcCGAGCCGCCcCCUGGCCuucgucguccgcGCGGGg -3'
miRNA:   3'- uUC-GCUCGGCGGcGGGCUGGc-----------UGCCU- -5'
9085 3' -64 NC_002512.2 + 134133 0.77 0.156187
Target:  5'- cAGGCG-GCCGUCGCggcgcgcgucCCGGCCGGCGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCG----------GGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 134062 0.66 0.632753
Target:  5'- -uGCGGGCCGUCGCCaccuuccCCGucuauCGGAu -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcu----GGCu----GCCU- -5'
9085 3' -64 NC_002512.2 + 133874 0.68 0.520833
Target:  5'- gGGGCG-GCUcgaggaGCgGCUCGGCCGGCGGu -3'
miRNA:   3'- -UUCGCuCGG------CGgCGGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 133698 0.66 0.642214
Target:  5'- -cGCG-GCCGCCuCCCGgACCaccgGACGGu -3'
miRNA:   3'- uuCGCuCGGCGGcGGGC-UGG----CUGCCu -5'
9085 3' -64 NC_002512.2 + 133657 0.72 0.307449
Target:  5'- gGGGCGGucgccGCCGCCGCCgCGGCCGcCGuGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGG-GCUGGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 133596 0.67 0.614782
Target:  5'- cGAGCGGGCCgGCCuccugcggaccuacgGCUCGAUCGucgccucgucccugGCGGAg -3'
miRNA:   3'- -UUCGCUCGG-CGG---------------CGGGCUGGC--------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 133233 0.71 0.385844
Target:  5'- gAGGUGAcgGCCGgcCCGUCCGAucCCGGCGGGg -3'
miRNA:   3'- -UUCGCU--CGGC--GGCGGGCU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 132544 0.66 0.642214
Target:  5'- cGGGCGGcGCCGucggccucuCCGCCCucGAccCCGGCGGGc -3'
miRNA:   3'- -UUCGCU-CGGC---------GGCGGG--CU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 131996 0.66 0.632753
Target:  5'- -cGUGGGCCGCC-CCgGgcGCCGGgGGGa -3'
miRNA:   3'- uuCGCUCGGCGGcGGgC--UGGCUgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.