Results 41 - 60 of 327 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9085 | 3' | -64 | NC_002512.2 | + | 96298 | 0.76 | 0.188299 |
Target: 5'- -cGCGGGCCGCCGCC--GCgGGCGGGc -3' miRNA: 3'- uuCGCUCGGCGGCGGgcUGgCUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 152267 | 0.76 | 0.179763 |
Target: 5'- cAGCGAGUCGUCGCUCGucguuCCGGCGGc -3' miRNA: 3'- uUCGCUCGGCGGCGGGCu----GGCUGCCu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 137992 | 0.77 | 0.167604 |
Target: 5'- cGAGCGGgccgugcgccgcGCCGCCGCCCGcGCCgGACGGc -3' miRNA: 3'- -UUCGCU------------CGGCGGCGGGC-UGG-CUGCCu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 103441 | 0.77 | 0.163718 |
Target: 5'- aAGGCG-GCCGCCGCcgucgCCGGCCgGGCGGGa -3' miRNA: 3'- -UUCGCuCGGCGGCG-----GGCUGG-CUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 134133 | 0.77 | 0.156187 |
Target: 5'- cAGGCG-GCCGUCGCggcgcgcgucCCGGCCGGCGGGg -3' miRNA: 3'- -UUCGCuCGGCGGCG----------GGCUGGCUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 103221 | 0.74 | 0.247276 |
Target: 5'- gAGGCGGcucgcGUCGCCGCCCG-UCGACGGc -3' miRNA: 3'- -UUCGCU-----CGGCGGCGGGCuGGCUGCCu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 33511 | 0.74 | 0.258478 |
Target: 5'- cGGCGucCCGaagugaGCCCGGCCGGCGGAg -3' miRNA: 3'- uUCGCucGGCgg----CGGGCUGGCUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 62463 | 0.72 | 0.348629 |
Target: 5'- cAGGCGuGCCGCCGCacgaGAUCGACGc- -3' miRNA: 3'- -UUCGCuCGGCGGCGgg--CUGGCUGCcu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 155275 | 0.72 | 0.348629 |
Target: 5'- -cGgGAGCCgagGCgGCUCGAgCCGACGGAg -3' miRNA: 3'- uuCgCUCGG---CGgCGGGCU-GGCUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 196693 | 0.72 | 0.3415 |
Target: 5'- cGAGCGGcaccGuCCGCCaGCCCGACCGGCu-- -3' miRNA: 3'- -UUCGCU----C-GGCGG-CGGGCUGGCUGccu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 41110 | 0.72 | 0.3415 |
Target: 5'- gAGGCcgGAGCCGCCGCCgGaACCGcccuUGGAc -3' miRNA: 3'- -UUCG--CUCGGCGGCGGgC-UGGCu---GCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 29237 | 0.72 | 0.3415 |
Target: 5'- -cGCGGGUCGCgcaGUCCGuccuCCGACGGGg -3' miRNA: 3'- uuCGCUCGGCGg--CGGGCu---GGCUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 76541 | 0.72 | 0.32756 |
Target: 5'- cAGCGGGacCCGCCGaCCCgGACCGgcccaGCGGAa -3' miRNA: 3'- uUCGCUC--GGCGGC-GGG-CUGGC-----UGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 133657 | 0.72 | 0.307449 |
Target: 5'- gGGGCGGucgccGCCGCCGCCgCGGCCGcCGuGGc -3' miRNA: 3'- -UUCGCU-----CGGCGGCGG-GCUGGCuGC-CU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 110531 | 0.73 | 0.300958 |
Target: 5'- cGAGCGAGUCGCCGU--GACCGGCGu- -3' miRNA: 3'- -UUCGCUCGGCGGCGggCUGGCUGCcu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 74627 | 0.73 | 0.294574 |
Target: 5'- -cGCGAGaCCGCCGCgCGAcggcCCGGgGGAg -3' miRNA: 3'- uuCGCUC-GGCGGCGgGCU----GGCUgCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 116713 | 0.73 | 0.288295 |
Target: 5'- cGGCGAcGCCGgucgcgucCCGCCCGGCCG-CGGc -3' miRNA: 3'- uUCGCU-CGGC--------GGCGGGCUGGCuGCCu -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 9682 | 0.73 | 0.282122 |
Target: 5'- --cCGGGCCGCCGUCgGGCCccGGCGGGg -3' miRNA: 3'- uucGCUCGGCGGCGGgCUGG--CUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 58892 | 0.73 | 0.276055 |
Target: 5'- aAAGCG-GCgUGUCG-CCGACCGACGGAg -3' miRNA: 3'- -UUCGCuCG-GCGGCgGGCUGGCUGCCU- -5' |
|||||||
9085 | 3' | -64 | NC_002512.2 | + | 127477 | 0.74 | 0.258478 |
Target: 5'- gAAGCGguucguGGCCGCCGCCCu-CgGGCGGGa -3' miRNA: 3'- -UUCGC------UCGGCGGCGGGcuGgCUGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home