miRNA display CGI


Results 61 - 80 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 116713 0.73 0.288295
Target:  5'- cGGCGAcGCCGgucgcgucCCGCCCGGCCG-CGGc -3'
miRNA:   3'- uUCGCU-CGGC--------GGCGGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 74627 0.73 0.294574
Target:  5'- -cGCGAGaCCGCCGCgCGAcggcCCGGgGGAg -3'
miRNA:   3'- uuCGCUC-GGCGGCGgGCU----GGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 11580 0.71 0.355863
Target:  5'- gGAGCacGAGCgGCCGCCCagGGCCGG-GGAc -3'
miRNA:   3'- -UUCG--CUCGgCGGCGGG--CUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 79364 0.71 0.362464
Target:  5'- -cGCG-GCCGCCGCguggaacugcaccCCGACCcGCGGGc -3'
miRNA:   3'- uuCGCuCGGCGGCG-------------GGCUGGcUGCCU- -5'
9085 3' -64 NC_002512.2 + 57861 0.71 0.363203
Target:  5'- gGGGCGcauGCUGCCgGCCgGACCGGCGa- -3'
miRNA:   3'- -UUCGCu--CGGCGG-CGGgCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 4910 0.71 0.369897
Target:  5'- aGGGCGccgccGCCGCCGCCCaGCggguagaCGGCGGAg -3'
miRNA:   3'- -UUCGCu----CGGCGGCGGGcUG-------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 41236 0.71 0.378194
Target:  5'- -cGaCGGGCCGCCGCCgCcGCCGGCGc- -3'
miRNA:   3'- uuC-GCUCGGCGGCGG-GcUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 75568 0.71 0.378194
Target:  5'- gGGGCgGGGCCGCCGCCgucgcgguCGACgUGGCGGc -3'
miRNA:   3'- -UUCG-CUCGGCGGCGG--------GCUG-GCUGCCu -5'
9085 3' -64 NC_002512.2 + 83170 0.71 0.378194
Target:  5'- -cGCG-GCCGCCGCCCcGCCGuCGu- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGcUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 15656 0.71 0.393595
Target:  5'- cGGCGAGCCgacgaGCCGCCUGAcgucCCGgggcaGCGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGCGGGCU----GGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 4083 0.71 0.355863
Target:  5'- cAGGCcacccGGCCGCCcgcgGCCCGGCCGGCGc- -3'
miRNA:   3'- -UUCGc----UCGGCGG----CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 137227 0.72 0.348629
Target:  5'- -cGCGGGCgGCCGuCCCGGauCCGcGCGGGu -3'
miRNA:   3'- uuCGCUCGgCGGC-GGGCU--GGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 110531 0.73 0.300958
Target:  5'- cGAGCGAGUCGCCGU--GACCGGCGu- -3'
miRNA:   3'- -UUCGCUCGGCGGCGggCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 133657 0.72 0.307449
Target:  5'- gGGGCGGucgccGCCGCCGCCgCGGCCGcCGuGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGG-GCUGGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 76541 0.72 0.32756
Target:  5'- cAGCGGGacCCGCCGaCCCgGACCGgcccaGCGGAa -3'
miRNA:   3'- uUCGCUC--GGCGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 29237 0.72 0.3415
Target:  5'- -cGCGGGUCGCgcaGUCCGuccuCCGACGGGg -3'
miRNA:   3'- uuCGCUCGGCGg--CGGGCu---GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 41110 0.72 0.3415
Target:  5'- gAGGCcgGAGCCGCCGCCgGaACCGcccuUGGAc -3'
miRNA:   3'- -UUCG--CUCGGCGGCGGgC-UGGCu---GCCU- -5'
9085 3' -64 NC_002512.2 + 196693 0.72 0.3415
Target:  5'- cGAGCGGcaccGuCCGCCaGCCCGACCGGCu-- -3'
miRNA:   3'- -UUCGCU----C-GGCGG-CGGGCUGGCUGccu -5'
9085 3' -64 NC_002512.2 + 155275 0.72 0.348629
Target:  5'- -cGgGAGCCgagGCgGCUCGAgCCGACGGAg -3'
miRNA:   3'- uuCgCUCGG---CGgCGGGCU-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 62463 0.72 0.348629
Target:  5'- cAGGCGuGCCGCCGCacgaGAUCGACGc- -3'
miRNA:   3'- -UUCGCuCGGCGGCGgg--CUGGCUGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.