miRNA display CGI


Results 101 - 120 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 60810 0.7 0.450575
Target:  5'- -cGCGGGCCGCgaCGCCgCcGCCG-CGGAg -3'
miRNA:   3'- uuCGCUCGGCG--GCGG-GcUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 131071 0.7 0.450575
Target:  5'- gAGGcCGAuCCGUCGCuCCGGCCGcCGGGg -3'
miRNA:   3'- -UUC-GCUcGGCGGCG-GGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 153248 0.7 0.450575
Target:  5'- gAAGCGAGCCGggagaCGAUCGACGGAu -3'
miRNA:   3'- -UUCGCUCGGCggcggGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 45294 0.69 0.459081
Target:  5'- -cGCGGGucggacggaCCGCCGCCCuGCCGgcccGCGGGu -3'
miRNA:   3'- uuCGCUC---------GGCGGCGGGcUGGC----UGCCU- -5'
9085 3' -64 NC_002512.2 + 105014 0.69 0.459081
Target:  5'- ---gGGGCCGCCGCCCGGuucUCGucCGGGu -3'
miRNA:   3'- uucgCUCGGCGGCGGGCU---GGCu-GCCU- -5'
9085 3' -64 NC_002512.2 + 27845 0.7 0.425589
Target:  5'- -cGCGAcacGaCCGCgaGCCgGACCGGCGGGg -3'
miRNA:   3'- uuCGCU---C-GGCGg-CGGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 112081 0.7 0.425589
Target:  5'- -cGCGAGcCCGUCGCCUGGCgGACc-- -3'
miRNA:   3'- uuCGCUC-GGCGGCGGGCUGgCUGccu -5'
9085 3' -64 NC_002512.2 + 11580 0.71 0.355863
Target:  5'- gGAGCacGAGCgGCCGCCCagGGCCGG-GGAc -3'
miRNA:   3'- -UUCG--CUCGgCGGCGGG--CUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 79364 0.71 0.362464
Target:  5'- -cGCG-GCCGCCGCguggaacugcaccCCGACCcGCGGGc -3'
miRNA:   3'- uuCGCuCGGCGGCG-------------GGCUGGcUGCCU- -5'
9085 3' -64 NC_002512.2 + 57861 0.71 0.363203
Target:  5'- gGGGCGcauGCUGCCgGCCgGACCGGCGa- -3'
miRNA:   3'- -UUCGCu--CGGCGG-CGGgCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 4910 0.71 0.369897
Target:  5'- aGGGCGccgccGCCGCCGCCCaGCggguagaCGGCGGAg -3'
miRNA:   3'- -UUCGCu----CGGCGGCGGGcUG-------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 41236 0.71 0.378194
Target:  5'- -cGaCGGGCCGCCGCCgCcGCCGGCGc- -3'
miRNA:   3'- uuC-GCUCGGCGGCGG-GcUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 75568 0.71 0.378194
Target:  5'- gGGGCgGGGCCGCCGCCgucgcgguCGACgUGGCGGc -3'
miRNA:   3'- -UUCG-CUCGGCGGCGG--------GCUG-GCUGCCu -5'
9085 3' -64 NC_002512.2 + 83170 0.71 0.378194
Target:  5'- -cGCG-GCCGCCGCCCcGCCGuCGu- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGcUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 15656 0.71 0.393595
Target:  5'- cGGCGAGCCgacgaGCCGCCUGAcgucCCGgggcaGCGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGCGGGCU----GGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 71015 0.7 0.401447
Target:  5'- cGGgGGGCCGCCG-CCGGCCGGuCGa- -3'
miRNA:   3'- uUCgCUCGGCGGCgGGCUGGCU-GCcu -5'
9085 3' -64 NC_002512.2 + 118900 0.7 0.401447
Target:  5'- cGAGCGGGCgGCCucgGUCC-ACCGGCGGc -3'
miRNA:   3'- -UUCGCUCGgCGG---CGGGcUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 45250 0.7 0.401447
Target:  5'- -cGCGGacucGCCGUCGgCCG-CCGGCGGGg -3'
miRNA:   3'- uuCGCU----CGGCGGCgGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 25221 0.7 0.408598
Target:  5'- gGAGCGAGCCGCCGgcgauccCCCGcgcgucGCCGuccCGGu -3'
miRNA:   3'- -UUCGCUCGGCGGC-------GGGC------UGGCu--GCCu -5'
9085 3' -64 NC_002512.2 + 137265 0.7 0.409397
Target:  5'- cGGCG-GCCGCCGUCCGuCCGuCGu- -3'
miRNA:   3'- uUCGCuCGGCGGCGGGCuGGCuGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.