Results 121 - 140 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9085 | 3' | -64 | NC_002512.2 | + | 139257 | 0.69 | 0.493926 |
Target: 5'- cGGCGccgGGUcgCGCCGCCCGGCgCG-CGGGg -3' miRNA: 3'- uUCGC---UCG--GCGGCGGGCUG-GCuGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 42572 | 0.69 | 0.493926 |
Target: 5'- cGGGCGGG-CGCCGCgaggCGAgCGGCGGGg -3' miRNA: 3'- -UUCGCUCgGCGGCGg---GCUgGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 116970 | 0.7 | 0.442156 |
Target: 5'- --cCGGGCCGCCgacGCCCcguccgggcgGGCCGACGGc -3' miRNA: 3'- uucGCUCGGCGG---CGGG----------CUGGCUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 55031 | 0.7 | 0.442156 |
Target: 5'- aGAGCcGGUCggGCCGCCU-ACCGACGGGa -3' miRNA: 3'- -UUCGcUCGG--CGGCGGGcUGGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 96944 | 0.7 | 0.442156 |
Target: 5'- cAGCGGGgCGUCGCgCCGACCGuCGu- -3' miRNA: 3'- uUCGCUCgGCGGCG-GGCUGGCuGCcu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 83170 | 0.71 | 0.378194 |
Target: 5'- -cGCG-GCCGCCGCCCcGCCGuCGu- -3' miRNA: 3'- uuCGCuCGGCGGCGGGcUGGCuGCcu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 15656 | 0.71 | 0.393595 |
Target: 5'- cGGCGAGCCgacgaGCCGCCUGAcgucCCGgggcaGCGGGc -3' miRNA: 3'- uUCGCUCGG-----CGGCGGGCU----GGC-----UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 71015 | 0.7 | 0.401447 |
Target: 5'- cGGgGGGCCGCCG-CCGGCCGGuCGa- -3' miRNA: 3'- uUCgCUCGGCGGCgGGCUGGCU-GCcu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 118900 | 0.7 | 0.401447 |
Target: 5'- cGAGCGGGCgGCCucgGUCC-ACCGGCGGc -3' miRNA: 3'- -UUCGCUCGgCGG---CGGGcUGGCUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 45250 | 0.7 | 0.401447 |
Target: 5'- -cGCGGacucGCCGUCGgCCG-CCGGCGGGg -3' miRNA: 3'- uuCGCU----CGGCGGCgGGCuGGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 25221 | 0.7 | 0.408598 |
Target: 5'- gGAGCGAGCCGCCGgcgauccCCCGcgcgucGCCGuccCGGu -3' miRNA: 3'- -UUCGCUCGGCGGC-------GGGC------UGGCu--GCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 137265 | 0.7 | 0.409397 |
Target: 5'- cGGCG-GCCGCCGUCCGuCCGuCGu- -3' miRNA: 3'- uUCGCuCGGCGGCGGGCuGGCuGCcu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 79142 | 0.69 | 0.502827 |
Target: 5'- cGGGUcuGGGCCG-CGCgCgGGCCGACGGGa -3' miRNA: 3'- -UUCG--CUCGGCgGCG-GgCUGGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 112081 | 0.7 | 0.425589 |
Target: 5'- -cGCGAGcCCGUCGCCUGGCgGACc-- -3' miRNA: 3'- uuCGCUC-GGCGGCGGGCUGgCUGccu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 27845 | 0.7 | 0.425589 |
Target: 5'- -cGCGAcacGaCCGCgaGCCgGACCGGCGGGg -3' miRNA: 3'- uuCGCU---C-GGCGg-CGGgCUGGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 81793 | 0.7 | 0.425589 |
Target: 5'- cGGCGccGCCGCCGCC--GCCGGgGGAc -3' miRNA: 3'- uUCGCu-CGGCGGCGGgcUGGCUgCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 112569 | 0.7 | 0.433826 |
Target: 5'- cAGCGGGaacCCGCCGUCCGuCCGgugguaguGCGGGa -3' miRNA: 3'- uUCGCUC---GGCGGCGGGCuGGC--------UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 137798 | 0.7 | 0.433826 |
Target: 5'- cGGCGGGCCGCgCGUCCGGCgGcCGu- -3' miRNA: 3'- uUCGCUCGGCG-GCGGGCUGgCuGCcu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 44979 | 0.7 | 0.433826 |
Target: 5'- cGGCGAaggggcaguagcGCCGCCGCCCG-CUGACc-- -3' miRNA: 3'- uUCGCU------------CGGCGGCGGGCuGGCUGccu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 60888 | 0.7 | 0.433826 |
Target: 5'- -cGcCGAGCCGgCGCgCGACCGcucggucgaGCGGAc -3' miRNA: 3'- uuC-GCUCGGCgGCGgGCUGGC---------UGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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