miRNA display CGI


Results 41 - 60 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 129978 0.67 0.623292
Target:  5'- cGGCGGGCCcccGgCGCCC--UCGACGGGc -3'
miRNA:   3'- uUCGCUCGG---CgGCGGGcuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 120872 0.66 0.651668
Target:  5'- -cGCGGGUccgcaggacgaCGCCGCCgGcGCCGACGa- -3'
miRNA:   3'- uuCGCUCG-----------GCGGCGGgC-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 227319 0.66 0.679923
Target:  5'- gGAGaCGcGCCGgCGCCCGAggaagggGACGGAg -3'
miRNA:   3'- -UUC-GCuCGGCgGCGGGCUgg-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 202131 0.67 0.623292
Target:  5'- uGGCGccggucucGGCCGCCGCCgCGG--GGCGGGu -3'
miRNA:   3'- uUCGC--------UCGGCGGCGG-GCUggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 113207 0.66 0.679923
Target:  5'- cGAGCggGAGCCGgguccUCGCCCGGggaGACGGGc -3'
miRNA:   3'- -UUCG--CUCGGC-----GGCGGGCUgg-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 211176 0.67 0.585564
Target:  5'- cGAGCGcGUCGCCGCCCuGCU--CGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGcUGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 95675 0.66 0.679923
Target:  5'- -cGUGAGCgcgCGuCCGCCgGGCCuccGGCGGGg -3'
miRNA:   3'- uuCGCUCG---GC-GGCGGgCUGG---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 184539 0.67 0.594967
Target:  5'- gGGGUcAGCCgGCgGCgCgGGCCGGCGGAc -3'
miRNA:   3'- -UUCGcUCGG-CGgCG-GgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 94677 0.67 0.604393
Target:  5'- cGGgGGGCCcCCcgGCCCG-CUGGCGGAc -3'
miRNA:   3'- uUCgCUCGGcGG--CGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 170055 0.67 0.604393
Target:  5'- uGGCc-GCCGCCGCCgCGGCCGccuucuUGGGc -3'
miRNA:   3'- uUCGcuCGGCGGCGG-GCUGGCu-----GCCU- -5'
9085 3' -64 NC_002512.2 + 129753 0.67 0.604393
Target:  5'- cGGUccGCCGCCGuCCaCGACggUGACGGAg -3'
miRNA:   3'- uUCGcuCGGCGGC-GG-GCUG--GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 200224 0.67 0.613837
Target:  5'- gGAGCcgGAGcCCGaggaGCCCGACgaCGACGGGg -3'
miRNA:   3'- -UUCG--CUC-GGCgg--CGGGCUG--GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 120264 0.67 0.623292
Target:  5'- -cGCGGGaCCGCCGgCUGA-UGACGGu -3'
miRNA:   3'- uuCGCUC-GGCGGCgGGCUgGCUGCCu -5'
9085 3' -64 NC_002512.2 + 131996 0.66 0.632753
Target:  5'- -cGUGGGCCGCC-CCgGgcGCCGGgGGGa -3'
miRNA:   3'- uuCGCUCGGCGGcGGgC--UGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 194039 0.66 0.636538
Target:  5'- cGGCGAuCCagGCCGCCUGGCUggugagggcgcacaaGACGGGg -3'
miRNA:   3'- uUCGCUcGG--CGGCGGGCUGG---------------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 90639 0.66 0.642214
Target:  5'- -cGCGAcCCGgCGCCgCGGCCG-CGGu -3'
miRNA:   3'- uuCGCUcGGCgGCGG-GCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 129684 0.66 0.651668
Target:  5'- cGGCGuAGCCcgaaucGCCGUCCGACuCGAgguaacCGGGg -3'
miRNA:   3'- uUCGC-UCGG------CGGCGGGCUG-GCU------GCCU- -5'
9085 3' -64 NC_002512.2 + 122531 0.66 0.661108
Target:  5'- cGGCGcGCCGCUggacaucagGCUCGcCgCGACGGAg -3'
miRNA:   3'- uUCGCuCGGCGG---------CGGGCuG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 110975 0.66 0.661108
Target:  5'- cGAGC-AGCCGCCGgUgGACCGA-GGc -3'
miRNA:   3'- -UUCGcUCGGCGGCgGgCUGGCUgCCu -5'
9085 3' -64 NC_002512.2 + 183513 0.66 0.670529
Target:  5'- aGGGgGAgGCCGUccuCGCCUGGCUG-CGGAc -3'
miRNA:   3'- -UUCgCU-CGGCG---GCGGGCUGGCuGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.