miRNA display CGI


Results 101 - 120 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 198300 0.69 0.493926
Target:  5'- gGAGCGGGCCG-CGCCCucuaggaucaGGCCGuucACGGc -3'
miRNA:   3'- -UUCGCUCGGCgGCGGG----------CUGGC---UGCCu -5'
9085 3' -64 NC_002512.2 + 206869 0.69 0.485098
Target:  5'- gGGGCGGcGCCGa-GCUCG-CCGACGGGu -3'
miRNA:   3'- -UUCGCU-CGGCggCGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 74402 0.69 0.475474
Target:  5'- aGAGCGgcGGCCaugGCCGUcucuucuUCGACCGACGGu -3'
miRNA:   3'- -UUCGC--UCGG---CGGCG-------GGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 96645 0.69 0.466809
Target:  5'- -cGCGAccggggcGCCGCCGCCCucCCGuccucgcuggGCGGAc -3'
miRNA:   3'- uuCGCU-------CGGCGGCGGGcuGGC----------UGCCU- -5'
9085 3' -64 NC_002512.2 + 75895 0.7 0.451422
Target:  5'- cGGCGucgcucuuucuguuuGCCGCCGCCgGcGCCGcCGGAc -3'
miRNA:   3'- uUCGCu--------------CGGCGGCGGgC-UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 117094 0.67 0.585564
Target:  5'- -uGCGGGCCGCCcuggaCCCGGCaCaGCGGc -3'
miRNA:   3'- uuCGCUCGGCGGc----GGGCUG-GcUGCCu -5'
9085 3' -64 NC_002512.2 + 220118 0.67 0.594967
Target:  5'- -cGUGAGCCGCCaCgCgGGgCGGCGGGu -3'
miRNA:   3'- uuCGCUCGGCGGcG-GgCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 126512 0.66 0.670529
Target:  5'- -cGCGAGCCucugGUCGgacgaCCCGACCG-CGGc -3'
miRNA:   3'- uuCGCUCGG----CGGC-----GGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 150682 0.66 0.670529
Target:  5'- cGGGCGcGGCgGUCGCC---CCGACGGAc -3'
miRNA:   3'- -UUCGC-UCGgCGGCGGgcuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 219677 0.66 0.661108
Target:  5'- --cUGGGCgCGCCGCCCGAggaCGA-GGAg -3'
miRNA:   3'- uucGCUCG-GCGGCGGGCUg--GCUgCCU- -5'
9085 3' -64 NC_002512.2 + 184656 0.66 0.660165
Target:  5'- -cGCGGG-CGCCGCgCCGAaauccggUCGGCGGc -3'
miRNA:   3'- uuCGCUCgGCGGCG-GGCU-------GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 94817 0.66 0.651668
Target:  5'- gGGGgGAGCCGUC-CCgGAgCCGcCGGAg -3'
miRNA:   3'- -UUCgCUCGGCGGcGGgCU-GGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 150968 0.66 0.642214
Target:  5'- gAGGCGGGCucgCGUCGCCauggugaccgcUGAUUGACGGGu -3'
miRNA:   3'- -UUCGCUCG---GCGGCGG-----------GCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 221054 0.66 0.632753
Target:  5'- cAGCGAGcCCGUCugGCCCaagcuCCGGCGGc -3'
miRNA:   3'- uUCGCUC-GGCGG--CGGGcu---GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 121051 0.66 0.632753
Target:  5'- uGGGcCGGGuacCCGCCGCCCGAggcGCGGAg -3'
miRNA:   3'- -UUC-GCUC---GGCGGCGGGCUggcUGCCU- -5'
9085 3' -64 NC_002512.2 + 222358 0.67 0.623292
Target:  5'- gGAGCG-GCacgggGCCGCCUuccCCGGCGGGc -3'
miRNA:   3'- -UUCGCuCGg----CGGCGGGcu-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 151219 0.67 0.613837
Target:  5'- uAGGCuccGAGCCccggcGCCgGCUCGACCGACGc- -3'
miRNA:   3'- -UUCG---CUCGG-----CGG-CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 128772 0.67 0.604393
Target:  5'- -cGCGAGCgcaCGCCGCgCCGcgcGCUGGcCGGGg -3'
miRNA:   3'- uuCGCUCG---GCGGCG-GGC---UGGCU-GCCU- -5'
9085 3' -64 NC_002512.2 + 157153 0.67 0.604393
Target:  5'- gGGGCGGGCgGCgGgCCGGgCGGCGuGGg -3'
miRNA:   3'- -UUCGCUCGgCGgCgGGCUgGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 130073 0.67 0.594967
Target:  5'- cGGUG-GCCGCCaGCUCGuaguacCCGACGGc -3'
miRNA:   3'- uUCGCuCGGCGG-CGGGCu-----GGCUGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.