miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9086 3' -60.3 NC_002512.2 + 63114 0.66 0.843785
Target:  5'- cCGGGACG-GGAGGAGa---GCCGUcCa -3'
miRNA:   3'- -GUCCUGCgCCUCCUCcuugCGGCGaG- -5'
9086 3' -60.3 NC_002512.2 + 98180 0.66 0.843785
Target:  5'- -cGGGCGCGGcgaccguccGAGGGAUGgCGUUCu -3'
miRNA:   3'- guCCUGCGCCuc-------CUCCUUGCgGCGAG- -5'
9086 3' -60.3 NC_002512.2 + 105 0.66 0.843785
Target:  5'- gCGGGugGgCGGAGGcggcggagaaaAGGAgaaACGCCGg-- -3'
miRNA:   3'- -GUCCugC-GCCUCC-----------UCCU---UGCGGCgag -5'
9086 3' -60.3 NC_002512.2 + 103467 0.66 0.843785
Target:  5'- gAGGACGCGGcucGGGucucGGcGGCGgCCGCg- -3'
miRNA:   3'- gUCCUGCGCC---UCCu---CC-UUGC-GGCGag -5'
9086 3' -60.3 NC_002512.2 + 124431 0.66 0.843785
Target:  5'- aCGGGACgacgaacguccuGCGGAGGAaccccGAGCcGCUGCUg -3'
miRNA:   3'- -GUCCUG------------CGCCUCCUc----CUUG-CGGCGAg -5'
9086 3' -60.3 NC_002512.2 + 92556 0.66 0.843785
Target:  5'- gCGGcGACGaCGucGGAGGcgccGACGCCGCg- -3'
miRNA:   3'- -GUC-CUGC-GCcuCCUCC----UUGCGGCGag -5'
9086 3' -60.3 NC_002512.2 + 28230 0.66 0.843785
Target:  5'- aAGGAacCGCGGccGGGGccgucGCGCCGCg- -3'
miRNA:   3'- gUCCU--GCGCCucCUCCu----UGCGGCGag -5'
9086 3' -60.3 NC_002512.2 + 28075 0.66 0.843785
Target:  5'- -cGGGCGCGGcGGAgacggcGGAGagguCGCCGCc- -3'
miRNA:   3'- guCCUGCGCCuCCU------CCUU----GCGGCGag -5'
9086 3' -60.3 NC_002512.2 + 122197 0.66 0.843021
Target:  5'- -cGGugGCGGAGGcggagauccagaaGGGGACGgCGaCg- -3'
miRNA:   3'- guCCugCGCCUCC-------------UCCUUGCgGC-Gag -5'
9086 3' -60.3 NC_002512.2 + 5907 0.66 0.841487
Target:  5'- gCGGGGCGCGc-GGGGGAuacggccaguccucGCGCCGg-- -3'
miRNA:   3'- -GUCCUGCGCcuCCUCCU--------------UGCGGCgag -5'
9086 3' -60.3 NC_002512.2 + 149283 0.66 0.840718
Target:  5'- gAGGA-GCGcGAGGAGGGcgagaucgucgacCGCCGCg- -3'
miRNA:   3'- gUCCUgCGC-CUCCUCCUu------------GCGGCGag -5'
9086 3' -60.3 NC_002512.2 + 6677 0.66 0.836066
Target:  5'- cCGGGACGCGcucc-GGGACGCCGUc- -3'
miRNA:   3'- -GUCCUGCGCcuccuCCUUGCGGCGag -5'
9086 3' -60.3 NC_002512.2 + 7446 0.66 0.836066
Target:  5'- -uGGcCGCGGcccGGGGGAA-GCCGCg- -3'
miRNA:   3'- guCCuGCGCCu--CCUCCUUgCGGCGag -5'
9086 3' -60.3 NC_002512.2 + 91985 0.66 0.836066
Target:  5'- cCAGGAccaCGUGGAGGAGaucgaGAGCcugaaGCUGCUg -3'
miRNA:   3'- -GUCCU---GCGCCUCCUC-----CUUG-----CGGCGAg -5'
9086 3' -60.3 NC_002512.2 + 153420 0.66 0.835285
Target:  5'- gAGGugGCGGAauggcggcaggccGGccGGGCGCgGCUUu -3'
miRNA:   3'- gUCCugCGCCU-------------CCucCUUGCGgCGAG- -5'
9086 3' -60.3 NC_002512.2 + 116684 0.66 0.835285
Target:  5'- gAGGAcccggcucccgcuCGCGGAgcGGAcGGcGACGCCGgUCg -3'
miRNA:   3'- gUCCU-------------GCGCCU--CCU-CC-UUGCGGCgAG- -5'
9086 3' -60.3 NC_002512.2 + 33653 0.66 0.833718
Target:  5'- -cGGGCGCGGcGGAcaGGGucucagaggcucacGCGCCggagGCUCg -3'
miRNA:   3'- guCCUGCGCCuCCU--CCU--------------UGCGG----CGAG- -5'
9086 3' -60.3 NC_002512.2 + 27091 0.66 0.828181
Target:  5'- aGGGACGCGGu-GAGc-AUGCuCGCUCg -3'
miRNA:   3'- gUCCUGCGCCucCUCcuUGCG-GCGAG- -5'
9086 3' -60.3 NC_002512.2 + 94531 0.66 0.828181
Target:  5'- --aGACGC--AGGGGGAcCGCCGUUCc -3'
miRNA:   3'- gucCUGCGccUCCUCCUuGCGGCGAG- -5'
9086 3' -60.3 NC_002512.2 + 72776 0.66 0.828181
Target:  5'- --cGACGCcG-GGAGGGACGUCGC-Cg -3'
miRNA:   3'- gucCUGCGcCuCCUCCUUGCGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.