miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9086 5' -55.6 NC_002512.2 + 123402 0.66 0.95528
Target:  5'- aGAUCCUGC-CgUCGGCCCu------ -3'
miRNA:   3'- aCUAGGACGuGaAGCCGGGcgugaaa -5'
9086 5' -55.6 NC_002512.2 + 194668 0.66 0.95528
Target:  5'- cGGUCCUGCACgcccacgUCGaCCUGguCUa- -3'
miRNA:   3'- aCUAGGACGUGa------AGCcGGGCguGAaa -5'
9086 5' -55.6 NC_002512.2 + 101599 0.66 0.951324
Target:  5'- cGGUCgUGCggGCggccgUCGGCCCgGCGCc-- -3'
miRNA:   3'- aCUAGgACG--UGa----AGCCGGG-CGUGaaa -5'
9086 5' -55.6 NC_002512.2 + 98566 0.66 0.951324
Target:  5'- gGAUCCggcggGCGCcUCGGgcggcgggucgUCCGCGCUg- -3'
miRNA:   3'- aCUAGGa----CGUGaAGCC-----------GGGCGUGAaa -5'
9086 5' -55.6 NC_002512.2 + 101696 0.66 0.947141
Target:  5'- cGGUCCcGC-CggCGGCCCGCuCg-- -3'
miRNA:   3'- aCUAGGaCGuGaaGCCGGGCGuGaaa -5'
9086 5' -55.6 NC_002512.2 + 72518 0.66 0.942727
Target:  5'- cGGUcCCUGCcCggCGGCCCGgACc-- -3'
miRNA:   3'- aCUA-GGACGuGaaGCCGGGCgUGaaa -5'
9086 5' -55.6 NC_002512.2 + 180209 0.66 0.942727
Target:  5'- cGAca-UGCACUggcugcCGGCCCGCGCc-- -3'
miRNA:   3'- aCUaggACGUGAa-----GCCGGGCGUGaaa -5'
9086 5' -55.6 NC_002512.2 + 130761 0.66 0.940896
Target:  5'- cGAUCCggccgUGCGCgaucucuuggagCGGCCCGgGCUc- -3'
miRNA:   3'- aCUAGG-----ACGUGaa----------GCCGGGCgUGAaa -5'
9086 5' -55.6 NC_002512.2 + 99328 0.66 0.93808
Target:  5'- cGGUCCUGUACgucgucUCGGaCCGC-CUg- -3'
miRNA:   3'- aCUAGGACGUGa-----AGCCgGGCGuGAaa -5'
9086 5' -55.6 NC_002512.2 + 188328 0.66 0.936155
Target:  5'- aGAaCCUGCGCgccaccgugcaGGCCCGCAa--- -3'
miRNA:   3'- aCUaGGACGUGaag--------CCGGGCGUgaaa -5'
9086 5' -55.6 NC_002512.2 + 19717 0.66 0.933198
Target:  5'- gUGcUCCUGgAUgaaCGGCCCGCugUc- -3'
miRNA:   3'- -ACuAGGACgUGaa-GCCGGGCGugAaa -5'
9086 5' -55.6 NC_002512.2 + 29428 0.66 0.933198
Target:  5'- cGA-CCUGUugcugaaaaACggCGGCCUGCGCUa- -3'
miRNA:   3'- aCUaGGACG---------UGaaGCCGGGCGUGAaa -5'
9086 5' -55.6 NC_002512.2 + 41555 0.66 0.933198
Target:  5'- cGggCCUGCACggUGGCgCGCAg--- -3'
miRNA:   3'- aCuaGGACGUGaaGCCGgGCGUgaaa -5'
9086 5' -55.6 NC_002512.2 + 135685 0.67 0.92808
Target:  5'- gUGGggCUGCuggggcuCUUCGGCCUGUACa-- -3'
miRNA:   3'- -ACUagGACGu------GAAGCCGGGCGUGaaa -5'
9086 5' -55.6 NC_002512.2 + 217677 0.67 0.922727
Target:  5'- gGGUCCggGCGCUUgGGCUgGCuCUUc -3'
miRNA:   3'- aCUAGGa-CGUGAAgCCGGgCGuGAAa -5'
9086 5' -55.6 NC_002512.2 + 149636 0.67 0.922727
Target:  5'- gGA-CC-GCACggagccCGGCCCGCACg-- -3'
miRNA:   3'- aCUaGGaCGUGaa----GCCGGGCGUGaaa -5'
9086 5' -55.6 NC_002512.2 + 134571 0.67 0.922727
Target:  5'- aUGuUCCgGUACggCGGCCCGCGg--- -3'
miRNA:   3'- -ACuAGGaCGUGaaGCCGGGCGUgaaa -5'
9086 5' -55.6 NC_002512.2 + 112877 0.67 0.916564
Target:  5'- aUGAUCUUGCgcccgcccugcguGCggccgUCGGCCCGCcCg-- -3'
miRNA:   3'- -ACUAGGACG-------------UGa----AGCCGGGCGuGaaa -5'
9086 5' -55.6 NC_002512.2 + 2755 0.67 0.911311
Target:  5'- gGAUCCUGCG--UCuGGUCUGCACc-- -3'
miRNA:   3'- aCUAGGACGUgaAG-CCGGGCGUGaaa -5'
9086 5' -55.6 NC_002512.2 + 9306 0.67 0.911311
Target:  5'- gGAUCCcgGCACUccaUCGGgCgGCGCa-- -3'
miRNA:   3'- aCUAGGa-CGUGA---AGCCgGgCGUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.