miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9087 3' -52.8 NC_002512.2 + 127196 0.66 0.996878
Target:  5'- gCGUCGcCgacGCCCGagACGGggggaugagggagguGAGACGCGg -3'
miRNA:   3'- -GCAGCuGa--UGGGCa-UGCU---------------CUCUGUGC- -5'
9087 3' -52.8 NC_002512.2 + 108118 0.66 0.996677
Target:  5'- -cUCGGCgguCCgCGguccCGAGAGGCGCGc -3'
miRNA:   3'- gcAGCUGau-GG-GCau--GCUCUCUGUGC- -5'
9087 3' -52.8 NC_002512.2 + 167420 0.66 0.996677
Target:  5'- gCGUCGAU--CUCGUGCG-GcGGCACGc -3'
miRNA:   3'- -GCAGCUGauGGGCAUGCuCuCUGUGC- -5'
9087 3' -52.8 NC_002512.2 + 60305 0.66 0.996677
Target:  5'- uGUCGuCgUACCUGgcggACGcGGAGACGCc -3'
miRNA:   3'- gCAGCuG-AUGGGCa---UGC-UCUCUGUGc -5'
9087 3' -52.8 NC_002512.2 + 214570 0.66 0.996677
Target:  5'- cCGUCGucccCUcccGCCUGgGCGAcGAGACGCu -3'
miRNA:   3'- -GCAGCu---GA---UGGGCaUGCU-CUCUGUGc -5'
9087 3' -52.8 NC_002512.2 + 147206 0.66 0.996677
Target:  5'- aCGcCGACaGCCCGaGCGGGAc-CGCGa -3'
miRNA:   3'- -GCaGCUGaUGGGCaUGCUCUcuGUGC- -5'
9087 3' -52.8 NC_002512.2 + 113652 0.66 0.996677
Target:  5'- aGUUGGCgcgGCCgGccGCGAGGGuGCGCGc -3'
miRNA:   3'- gCAGCUGa--UGGgCa-UGCUCUC-UGUGC- -5'
9087 3' -52.8 NC_002512.2 + 156507 0.66 0.996129
Target:  5'- --aCGGCgGCCUGgGCGGcGGGGCGCGg -3'
miRNA:   3'- gcaGCUGaUGGGCaUGCU-CUCUGUGC- -5'
9087 3' -52.8 NC_002512.2 + 225153 0.66 0.996129
Target:  5'- cCGUCGACgacgcaUGCCCGgagcCGGGAGcaACAgGa -3'
miRNA:   3'- -GCAGCUG------AUGGGCau--GCUCUC--UGUgC- -5'
9087 3' -52.8 NC_002512.2 + 61844 0.66 0.996129
Target:  5'- --cCGACU-CCCGaGCGAGAuaGGCGCc -3'
miRNA:   3'- gcaGCUGAuGGGCaUGCUCU--CUGUGc -5'
9087 3' -52.8 NC_002512.2 + 95287 0.66 0.996129
Target:  5'- gGUCGGgUuCCCGUcgGCGGacGAGGCGCc -3'
miRNA:   3'- gCAGCUgAuGGGCA--UGCU--CUCUGUGc -5'
9087 3' -52.8 NC_002512.2 + 3983 0.66 0.996129
Target:  5'- gGUCGACgcgcuCCuCGggagGCGGGGGGCGuCGc -3'
miRNA:   3'- gCAGCUGau---GG-GCa---UGCUCUCUGU-GC- -5'
9087 3' -52.8 NC_002512.2 + 115092 0.66 0.996129
Target:  5'- gGUCGuCUGCCgGgACGucGGGACGCc -3'
miRNA:   3'- gCAGCuGAUGGgCaUGCu-CUCUGUGc -5'
9087 3' -52.8 NC_002512.2 + 122879 0.66 0.996129
Target:  5'- aCGUCGGCcGCCUaccgaGAGGGAgACGa -3'
miRNA:   3'- -GCAGCUGaUGGGcaug-CUCUCUgUGC- -5'
9087 3' -52.8 NC_002512.2 + 219344 0.66 0.995508
Target:  5'- cCGcCGGCUGCCCGgcguccGCGAGGuccuGCGCc -3'
miRNA:   3'- -GCaGCUGAUGGGCa-----UGCUCUc---UGUGc -5'
9087 3' -52.8 NC_002512.2 + 224259 0.66 0.995508
Target:  5'- gGUCGGC-GCCCGacgcccGCGAGAGAgAa- -3'
miRNA:   3'- gCAGCUGaUGGGCa-----UGCUCUCUgUgc -5'
9087 3' -52.8 NC_002512.2 + 93551 0.66 0.995508
Target:  5'- cCG-CGACggggACCUG-AUGGGAGACAUc -3'
miRNA:   3'- -GCaGCUGa---UGGGCaUGCUCUCUGUGc -5'
9087 3' -52.8 NC_002512.2 + 128130 0.66 0.995375
Target:  5'- cCGcCGACggagcGCCCGggccaccaccucGCGAGGGAgACGg -3'
miRNA:   3'- -GCaGCUGa----UGGGCa-----------UGCUCUCUgUGC- -5'
9087 3' -52.8 NC_002512.2 + 135768 0.66 0.994809
Target:  5'- gCGUC--CUGgCCG-ACGAGAGGCugGc -3'
miRNA:   3'- -GCAGcuGAUgGGCaUGCUCUCUGugC- -5'
9087 3' -52.8 NC_002512.2 + 136204 0.66 0.994809
Target:  5'- gCGUCGACgccggcgGCCUGgugcGCGGGGGucaGCGu -3'
miRNA:   3'- -GCAGCUGa------UGGGCa---UGCUCUCug-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.