miRNA display CGI


Results 1 - 20 of 697 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9087 5' -63 NC_002512.2 + 15647 0.66 0.768626
Target:  5'- gGCCGCgggcggcgaGCCGACgaGCCGccuGACGucccGGGGCa -3'
miRNA:   3'- -CGGCG---------CGGCUG--CGGC---CUGCuc--CUCCG- -5'
9087 5' -63 NC_002512.2 + 192179 0.66 0.768626
Target:  5'- cGCUGU-CCGuccuGCGCCGcGGCuGGGGAGGa -3'
miRNA:   3'- -CGGCGcGGC----UGCGGC-CUG-CUCCUCCg -5'
9087 5' -63 NC_002512.2 + 199343 0.66 0.768626
Target:  5'- gGCCGCGCCcACGgCGaACGAGaucaccGGCu -3'
miRNA:   3'- -CGGCGCGGcUGCgGCcUGCUCcu----CCG- -5'
9087 5' -63 NC_002512.2 + 132690 0.66 0.768626
Target:  5'- gGCC-CGCCGcCGCagaCGGGCGucGuGGGCg -3'
miRNA:   3'- -CGGcGCGGCuGCG---GCCUGCucC-UCCG- -5'
9087 5' -63 NC_002512.2 + 60863 0.66 0.768626
Target:  5'- cGCCGCucGCgGACGCCgcccGGAucgcCGAGccGGCg -3'
miRNA:   3'- -CGGCG--CGgCUGCGG----CCU----GCUCcuCCG- -5'
9087 5' -63 NC_002512.2 + 133421 0.66 0.768626
Target:  5'- gGCCGCGCgGuccGCGCguuugguucCGGGgGAcGGuGGCg -3'
miRNA:   3'- -CGGCGCGgC---UGCG---------GCCUgCU-CCuCCG- -5'
9087 5' -63 NC_002512.2 + 64904 0.66 0.768626
Target:  5'- gGCCGCgauGUCGAgGCCGGGCcagaccauGAcGGGGUc -3'
miRNA:   3'- -CGGCG---CGGCUgCGGCCUG--------CUcCUCCG- -5'
9087 5' -63 NC_002512.2 + 187010 0.66 0.768626
Target:  5'- gGCCuguaCGCgGGCG-UGGAgGAGGAGGa -3'
miRNA:   3'- -CGGc---GCGgCUGCgGCCUgCUCCUCCg -5'
9087 5' -63 NC_002512.2 + 209313 0.66 0.768626
Target:  5'- gGCgGCGUcaggguCGAC-CUGGACGAcgagauGGAGGUg -3'
miRNA:   3'- -CGgCGCG------GCUGcGGCCUGCU------CCUCCG- -5'
9087 5' -63 NC_002512.2 + 123554 0.66 0.768626
Target:  5'- --gGCGCgGACGUC-GAgGGGGAGaGCg -3'
miRNA:   3'- cggCGCGgCUGCGGcCUgCUCCUC-CG- -5'
9087 5' -63 NC_002512.2 + 42700 0.66 0.768626
Target:  5'- cGCgGCGCCGgcACGCCGaaGAUG-GcGGGCc -3'
miRNA:   3'- -CGgCGCGGC--UGCGGC--CUGCuCcUCCG- -5'
9087 5' -63 NC_002512.2 + 20871 0.66 0.768626
Target:  5'- cGCCccgcucaugGCGgCGACGaCGGGgGAaGAGGCg -3'
miRNA:   3'- -CGG---------CGCgGCUGCgGCCUgCUcCUCCG- -5'
9087 5' -63 NC_002512.2 + 103391 0.66 0.768626
Target:  5'- gGCuCGCGCCcaACGCCGGGgaucCGGGcGAcGCg -3'
miRNA:   3'- -CG-GCGCGGc-UGCGGCCU----GCUC-CUcCG- -5'
9087 5' -63 NC_002512.2 + 96615 0.66 0.768626
Target:  5'- -gCGCGgaGACGCgggggaGGGCGAGGAaaccgcgaccggGGCg -3'
miRNA:   3'- cgGCGCggCUGCGg-----CCUGCUCCU------------CCG- -5'
9087 5' -63 NC_002512.2 + 174706 0.66 0.768626
Target:  5'- gGCCGCGUgGAUGCCGu---AGGucauGGGCa -3'
miRNA:   3'- -CGGCGCGgCUGCGGCcugcUCC----UCCG- -5'
9087 5' -63 NC_002512.2 + 137323 0.66 0.768626
Target:  5'- cGCgGCGUCGGCGCCuccGACGucGucGCc -3'
miRNA:   3'- -CGgCGCGGCUGCGGc--CUGCucCucCG- -5'
9087 5' -63 NC_002512.2 + 154545 0.66 0.768626
Target:  5'- uCCGcCGCCucCGCCucGGucgccAUGGGGGGGCa -3'
miRNA:   3'- cGGC-GCGGcuGCGG--CC-----UGCUCCUCCG- -5'
9087 5' -63 NC_002512.2 + 200131 0.66 0.767763
Target:  5'- cGUCGCGUCGAuCGCCGGGCccccucgcgcgccGccacGGuaGGGCg -3'
miRNA:   3'- -CGGCGCGGCU-GCGGCCUG-------------Cu---CC--UCCG- -5'
9087 5' -63 NC_002512.2 + 3334 0.66 0.763434
Target:  5'- aGCCGgaGuCCGACGCCuuccucuuccucccGAuCGAGGAcGGCg -3'
miRNA:   3'- -CGGCg-C-GGCUGCGGc-------------CU-GCUCCU-CCG- -5'
9087 5' -63 NC_002512.2 + 10850 0.66 0.763434
Target:  5'- cGCCGCgGCCGAcgacguagaccagcaCGUCGcaGCagcagugcugGAGGAGGCg -3'
miRNA:   3'- -CGGCG-CGGCU---------------GCGGCc-UG----------CUCCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.