miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9091 3' -53.9 NC_002512.2 + 66730 0.66 0.988561
Target:  5'- cUCGuUUCgAauGGuCGGACCCCUucauUCUACa -3'
miRNA:   3'- -AGCuAGGgU--UCuGCCUGGGGA----AGAUG- -5'
9091 3' -53.9 NC_002512.2 + 4604 0.66 0.988561
Target:  5'- gCGggCCgCGAGACGGACgCCgaggACg -3'
miRNA:   3'- aGCuaGG-GUUCUGCCUGgGGaagaUG- -5'
9091 3' -53.9 NC_002512.2 + 97859 0.66 0.987093
Target:  5'- gCGAcgaCCGAGACGGACCCg------ -3'
miRNA:   3'- aGCUag-GGUUCUGCCUGGGgaagaug -5'
9091 3' -53.9 NC_002512.2 + 130487 0.66 0.987093
Target:  5'- aCGAagccgcCCCGGGAgucCGGACCCCgacgCUGg -3'
miRNA:   3'- aGCUa-----GGGUUCU---GCCUGGGGaa--GAUg -5'
9091 3' -53.9 NC_002512.2 + 178654 0.66 0.987093
Target:  5'- cUCGAgcgaaggaaggCCC-AGA-GGACCCCggCUACc -3'
miRNA:   3'- -AGCUa----------GGGuUCUgCCUGGGGaaGAUG- -5'
9091 3' -53.9 NC_002512.2 + 122210 0.66 0.985484
Target:  5'- ----aCCCAGGACGG-CUCggUCUGCg -3'
miRNA:   3'- agcuaGGGUUCUGCCuGGGgaAGAUG- -5'
9091 3' -53.9 NC_002512.2 + 189890 0.66 0.985484
Target:  5'- aCGA-CCCGAGuCGGACCCaagaucgCUGu -3'
miRNA:   3'- aGCUaGGGUUCuGCCUGGGgaa----GAUg -5'
9091 3' -53.9 NC_002512.2 + 129786 0.66 0.985484
Target:  5'- cUCG-UCCCGGGcCGGcaguccCCCCUUCcGCc -3'
miRNA:   3'- -AGCuAGGGUUCuGCCu-----GGGGAAGaUG- -5'
9091 3' -53.9 NC_002512.2 + 168350 0.66 0.985484
Target:  5'- gUCGAUCcgcaCCGAGGUGGACUCCUgucGCa -3'
miRNA:   3'- -AGCUAG----GGUUCUGCCUGGGGAagaUG- -5'
9091 3' -53.9 NC_002512.2 + 27153 0.66 0.985484
Target:  5'- aUCGuGUCCgCGgaugAGAgCGGACCCUUUCgACa -3'
miRNA:   3'- -AGC-UAGG-GU----UCU-GCCUGGGGAAGaUG- -5'
9091 3' -53.9 NC_002512.2 + 176664 0.66 0.983726
Target:  5'- -gGGUCCCAGGagcuuaccuguuGCGGAUCCgCUgucuuuuuagaUCUGCu -3'
miRNA:   3'- agCUAGGGUUC------------UGCCUGGG-GA-----------AGAUG- -5'
9091 3' -53.9 NC_002512.2 + 119257 0.66 0.983726
Target:  5'- -gGAUCCC--GGC-GACCCCauggUCUGCg -3'
miRNA:   3'- agCUAGGGuuCUGcCUGGGGa---AGAUG- -5'
9091 3' -53.9 NC_002512.2 + 176016 0.66 0.981811
Target:  5'- cUGGUCCCuggggaacGGACGGuCCCCcUCUc- -3'
miRNA:   3'- aGCUAGGGu-------UCUGCCuGGGGaAGAug -5'
9091 3' -53.9 NC_002512.2 + 97021 0.66 0.981811
Target:  5'- gUGAUCCU--GACGGAguccguCUUCUUCUGCa -3'
miRNA:   3'- aGCUAGGGuuCUGCCU------GGGGAAGAUG- -5'
9091 3' -53.9 NC_002512.2 + 96873 0.66 0.981811
Target:  5'- cUCGAucgcggcgcacuUCCCGGGGgcCGGGuuCCCCUgCUACu -3'
miRNA:   3'- -AGCU------------AGGGUUCU--GCCU--GGGGAaGAUG- -5'
9091 3' -53.9 NC_002512.2 + 28194 0.66 0.981811
Target:  5'- cCGAUCCCGcaccAGACGcGGCCgCCcUCg-- -3'
miRNA:   3'- aGCUAGGGU----UCUGC-CUGG-GGaAGaug -5'
9091 3' -53.9 NC_002512.2 + 129086 0.66 0.981811
Target:  5'- gUCGAcCCCgAGGACGGGCggcgUCUGCg -3'
miRNA:   3'- -AGCUaGGG-UUCUGCCUGgggaAGAUG- -5'
9091 3' -53.9 NC_002512.2 + 11585 0.66 0.979733
Target:  5'- aCGAgcggccgCCCAGGGCcggGGACCCCgag-GCc -3'
miRNA:   3'- aGCUa------GGGUUCUG---CCUGGGGaagaUG- -5'
9091 3' -53.9 NC_002512.2 + 102119 0.66 0.979733
Target:  5'- cUCGGccgUCgGAGGgGGACCCUggccgUCUACg -3'
miRNA:   3'- -AGCUa--GGgUUCUgCCUGGGGa----AGAUG- -5'
9091 3' -53.9 NC_002512.2 + 133587 0.67 0.977482
Target:  5'- cCGGggaCCCGAG-CGGGCCggCCUcCUGCg -3'
miRNA:   3'- aGCUa--GGGUUCuGCCUGG--GGAaGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.