miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9091 5' -60.7 NC_002512.2 + 143570 0.66 0.812786
Target:  5'- cCGCGGGcgggccggcggAGAGGGAGGcgCC-CUUGc- -3'
miRNA:   3'- aGCGCCC-----------UCUCCCUCCa-GGaGGACaa -5'
9091 5' -60.7 NC_002512.2 + 189260 0.66 0.812786
Target:  5'- gUCG-GGGAGAGGuacgucGAGGUCCggCCUc-- -3'
miRNA:   3'- -AGCgCCCUCUCC------CUCCAGGa-GGAcaa -5'
9091 5' -60.7 NC_002512.2 + 3666 0.66 0.812785
Target:  5'- cUCGCGGccGAcgguccGGAGGUCCUCCcGUc -3'
miRNA:   3'- -AGCGCCcuCUc-----CCUCCAGGAGGaCAa -5'
9091 5' -60.7 NC_002512.2 + 86447 0.66 0.812785
Target:  5'- gCGCGGGAcGGGGGAcGGgugCCgCgUGUg -3'
miRNA:   3'- aGCGCCCU-CUCCCU-CCa--GGaGgACAa -5'
9091 5' -60.7 NC_002512.2 + 135817 0.66 0.804427
Target:  5'- gUCGCgGGGGGAGGaGGGUCCcgcgcccuUCCcgGUc -3'
miRNA:   3'- -AGCG-CCCUCUCCcUCCAGG--------AGGa-CAa -5'
9091 5' -60.7 NC_002512.2 + 103702 0.66 0.787296
Target:  5'- aCGCGGcGGGAGGGGGcGccgCCaugaUCCUGa- -3'
miRNA:   3'- aGCGCC-CUCUCCCUC-Ca--GG----AGGACaa -5'
9091 5' -60.7 NC_002512.2 + 83408 0.66 0.787296
Target:  5'- cCGUGGGGGuuuccgugguGGGuGAGGUUCUCCg--- -3'
miRNA:   3'- aGCGCCCUC----------UCC-CUCCAGGAGGacaa -5'
9091 5' -60.7 NC_002512.2 + 155377 0.66 0.778538
Target:  5'- -gGCGGGAccgcGAGGcuggcGAGGUCCucuccgUCCUGUc -3'
miRNA:   3'- agCGCCCU----CUCC-----CUCCAGG------AGGACAa -5'
9091 5' -60.7 NC_002512.2 + 169232 0.66 0.778538
Target:  5'- -gGUGGGAGccaaguguGGGAGGggCCugUCCUGUg -3'
miRNA:   3'- agCGCCCUCu-------CCCUCCa-GG--AGGACAa -5'
9091 5' -60.7 NC_002512.2 + 183491 0.66 0.773226
Target:  5'- cUGCGGGccgccuacggccgcgAGGGGGAGGccgUCCUcgCCUGg- -3'
miRNA:   3'- aGCGCCC---------------UCUCCCUCC---AGGA--GGACaa -5'
9091 5' -60.7 NC_002512.2 + 110565 0.67 0.75977
Target:  5'- gCGCGGGAGGuccugccGGGucAGGaUCUCCUGa- -3'
miRNA:   3'- aGCGCCCUCU-------CCC--UCCaGGAGGACaa -5'
9091 5' -60.7 NC_002512.2 + 133820 0.67 0.751585
Target:  5'- gUGCGGGgggaagaggaGGAGGGAGG-CCUCUc--- -3'
miRNA:   3'- aGCGCCC----------UCUCCCUCCaGGAGGacaa -5'
9091 5' -60.7 NC_002512.2 + 126909 0.67 0.742401
Target:  5'- cUCGCGGcGGGGGGAGG-CCgggCUGg- -3'
miRNA:   3'- -AGCGCCcUCUCCCUCCaGGag-GACaa -5'
9091 5' -60.7 NC_002512.2 + 183049 0.67 0.742401
Target:  5'- aUGgGGGGGGGGGAGauuaacguuacGUUCUaCCUGUa -3'
miRNA:   3'- aGCgCCCUCUCCCUC-----------CAGGA-GGACAa -5'
9091 5' -60.7 NC_002512.2 + 193567 0.67 0.73313
Target:  5'- -gGUGGGAGGGGuGGGGaucucaUCCUCCg--- -3'
miRNA:   3'- agCGCCCUCUCC-CUCC------AGGAGGacaa -5'
9091 5' -60.7 NC_002512.2 + 158152 0.67 0.73313
Target:  5'- gUCGCGGGAGcgguacugauGGGAGGaUCggUCUGUa -3'
miRNA:   3'- -AGCGCCCUCu---------CCCUCC-AGgaGGACAa -5'
9091 5' -60.7 NC_002512.2 + 131299 0.67 0.73313
Target:  5'- gCGCGGGAGGucGGGAaGaUCCUCCg--- -3'
miRNA:   3'- aGCGCCCUCU--CCCUcC-AGGAGGacaa -5'
9091 5' -60.7 NC_002512.2 + 210413 0.67 0.714359
Target:  5'- aCGCGgcGGGGAGGcGAGGUCCgggaUGUg -3'
miRNA:   3'- aGCGC--CCUCUCC-CUCCAGGagg-ACAa -5'
9091 5' -60.7 NC_002512.2 + 86178 0.68 0.704874
Target:  5'- cUGCGGGAGcuGGAGGUcgcgcCCUCCg--- -3'
miRNA:   3'- aGCGCCCUCucCCUCCA-----GGAGGacaa -5'
9091 5' -60.7 NC_002512.2 + 98381 0.68 0.685748
Target:  5'- gUCGUGGGGGAaGaGGGGUUCUCCg--- -3'
miRNA:   3'- -AGCGCCCUCUcC-CUCCAGGAGGacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.