miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9092 3' -53.3 NC_002512.2 + 119184 0.66 0.995632
Target:  5'- aCGACGCucguggACCuGCGCaacgucUGCAUCUCGc -3'
miRNA:   3'- -GCUGCGca----UGGcUGCG------AUGUAGAGCc -5'
9092 3' -53.3 NC_002512.2 + 220501 0.66 0.995632
Target:  5'- ---aGCGagGCCGugGcCUGCGUCgccCGGg -3'
miRNA:   3'- gcugCGCa-UGGCugC-GAUGUAGa--GCC- -5'
9092 3' -53.3 NC_002512.2 + 98181 0.66 0.995632
Target:  5'- gGGCGCGgcgACCGucCGagggaugGCGUuCUCGGg -3'
miRNA:   3'- gCUGCGCa--UGGCu-GCga-----UGUA-GAGCC- -5'
9092 3' -53.3 NC_002512.2 + 127234 0.66 0.995632
Target:  5'- aGACGCGggcacgACCGAgGCgACggC-CGGa -3'
miRNA:   3'- gCUGCGCa-----UGGCUgCGaUGuaGaGCC- -5'
9092 3' -53.3 NC_002512.2 + 216333 0.66 0.995632
Target:  5'- cCGACGCGgu-CGGCGgCUcgAUCUUGGu -3'
miRNA:   3'- -GCUGCGCaugGCUGC-GAugUAGAGCC- -5'
9092 3' -53.3 NC_002512.2 + 12003 0.66 0.995632
Target:  5'- aCGACGCG-GCCGcCG----AUCUCGGa -3'
miRNA:   3'- -GCUGCGCaUGGCuGCgaugUAGAGCC- -5'
9092 3' -53.3 NC_002512.2 + 78655 0.66 0.995632
Target:  5'- uGGCGuCGgucgaGCCGGCGCcggggCUCGGa -3'
miRNA:   3'- gCUGC-GCa----UGGCUGCGauguaGAGCC- -5'
9092 3' -53.3 NC_002512.2 + 130864 0.66 0.995632
Target:  5'- aGGCGCccucGCCGACGCgcccuaUCGGg -3'
miRNA:   3'- gCUGCGca--UGGCUGCGauguagAGCC- -5'
9092 3' -53.3 NC_002512.2 + 108397 0.66 0.994952
Target:  5'- --uCGCGccGCCGAUGCUGCugcugCUCGu -3'
miRNA:   3'- gcuGCGCa-UGGCUGCGAUGua---GAGCc -5'
9092 3' -53.3 NC_002512.2 + 145381 0.66 0.994952
Target:  5'- aCGACuGgGagcCCGACGCgGCGUC-CGGg -3'
miRNA:   3'- -GCUG-CgCau-GGCUGCGaUGUAGaGCC- -5'
9092 3' -53.3 NC_002512.2 + 219571 0.66 0.994952
Target:  5'- gGACGUGUG-CGACGgcucCUACGUCcUGGu -3'
miRNA:   3'- gCUGCGCAUgGCUGC----GAUGUAGaGCC- -5'
9092 3' -53.3 NC_002512.2 + 170782 0.66 0.994952
Target:  5'- gGGCGCG-AUCGGCGCgacgACGg--CGGc -3'
miRNA:   3'- gCUGCGCaUGGCUGCGa---UGUagaGCC- -5'
9092 3' -53.3 NC_002512.2 + 93394 0.66 0.994952
Target:  5'- gGGCGC--GCCGaACGCgUGCAccuUCUUGGu -3'
miRNA:   3'- gCUGCGcaUGGC-UGCG-AUGU---AGAGCC- -5'
9092 3' -53.3 NC_002512.2 + 33644 0.66 0.994952
Target:  5'- aGGCGCGcGCgGGCGCggcggACAgggUCUCa- -3'
miRNA:   3'- gCUGCGCaUGgCUGCGa----UGU---AGAGcc -5'
9092 3' -53.3 NC_002512.2 + 19438 0.66 0.99488
Target:  5'- gGACGCauccacggguccaGUccCCGACGCcACAUCcCGGa -3'
miRNA:   3'- gCUGCG-------------CAu-GGCUGCGaUGUAGaGCC- -5'
9092 3' -53.3 NC_002512.2 + 154133 0.66 0.99419
Target:  5'- --cCGCGgucuCCGACGC-GCG-CUCGGu -3'
miRNA:   3'- gcuGCGCau--GGCUGCGaUGUaGAGCC- -5'
9092 3' -53.3 NC_002512.2 + 196941 0.66 0.99419
Target:  5'- cCGGCGUGUuguGCCGAauUGCUGC-UCgaCGGc -3'
miRNA:   3'- -GCUGCGCA---UGGCU--GCGAUGuAGa-GCC- -5'
9092 3' -53.3 NC_002512.2 + 213772 0.66 0.99419
Target:  5'- uGAuCGCGgucaaccggcUGCUGACGCUGgGacgCUCGGc -3'
miRNA:   3'- gCU-GCGC----------AUGGCUGCGAUgUa--GAGCC- -5'
9092 3' -53.3 NC_002512.2 + 113177 0.66 0.993943
Target:  5'- gGACGU--GCCGGgGCUGCGUUguuccagagcggcgUCGGc -3'
miRNA:   3'- gCUGCGcaUGGCUgCGAUGUAG--------------AGCC- -5'
9092 3' -53.3 NC_002512.2 + 4099 0.66 0.993336
Target:  5'- --cCGCGgcccgGCCGGCGCaGC--CUCGGg -3'
miRNA:   3'- gcuGCGCa----UGGCUGCGaUGuaGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.