miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9092 5' -67 NC_002512.2 + 190956 0.66 0.567803
Target:  5'- aCGCgGGcGCC--CGCCGCggcgGCCCCuCCGg -3'
miRNA:   3'- -GCGgCU-CGGccGCGGCGa---UGGGG-GGC- -5'
9092 5' -67 NC_002512.2 + 39613 0.66 0.567803
Target:  5'- uGCUcgGAGCCGaCGUCGUgcACCaCCCCGa -3'
miRNA:   3'- gCGG--CUCGGCcGCGGCGa-UGG-GGGGC- -5'
9092 5' -67 NC_002512.2 + 28142 0.66 0.567803
Target:  5'- -cCCGGGaUCGGCGCCccaGCcgucgucuCCCCCCGc -3'
miRNA:   3'- gcGGCUC-GGCCGCGG---CGau------GGGGGGC- -5'
9092 5' -67 NC_002512.2 + 3147 0.66 0.567803
Target:  5'- gGCCGGagcccggucccGCCGuCGUCGCccgcgGCCUCCCGu -3'
miRNA:   3'- gCGGCU-----------CGGCcGCGGCGa----UGGGGGGC- -5'
9092 5' -67 NC_002512.2 + 116738 0.66 0.567803
Target:  5'- gGCCGcggcgaGGCCGGCGCCccGCgcGCgUCUCCGa -3'
miRNA:   3'- gCGGC------UCGGCCGCGG--CGa-UG-GGGGGC- -5'
9092 5' -67 NC_002512.2 + 129977 0.66 0.567803
Target:  5'- uCGgCGGGCCcccGGCgcccucgacggGCCGCgccuCCUCCCGg -3'
miRNA:   3'- -GCgGCUCGG---CCG-----------CGGCGau--GGGGGGC- -5'
9092 5' -67 NC_002512.2 + 119400 0.66 0.567803
Target:  5'- uGCaGGGCCGcGUGCCGCUGCUcgggagcguggaCCgCGg -3'
miRNA:   3'- gCGgCUCGGC-CGCGGCGAUGG------------GGgGC- -5'
9092 5' -67 NC_002512.2 + 61765 0.66 0.567803
Target:  5'- uCGCCGcGGCCGG-GCCccucucCUACCCugcuCCCGc -3'
miRNA:   3'- -GCGGC-UCGGCCgCGGc-----GAUGGG----GGGC- -5'
9092 5' -67 NC_002512.2 + 217965 0.66 0.567803
Target:  5'- uGCCuauuuGCCGaGCGCCGCU--UCCUCGg -3'
miRNA:   3'- gCGGcu---CGGC-CGCGGCGAugGGGGGC- -5'
9092 5' -67 NC_002512.2 + 220963 0.66 0.565082
Target:  5'- uCGCCGAcCCGGCcgagGCCGCccugGCCaggagggucgagugCCCCa -3'
miRNA:   3'- -GCGGCUcGGCCG----CGGCGa---UGG--------------GGGGc -5'
9092 5' -67 NC_002512.2 + 7488 0.66 0.562365
Target:  5'- nGCCGaAGCC-GCGgCGCUccaugaggagccagaGCCCgCCGg -3'
miRNA:   3'- gCGGC-UCGGcCGCgGCGA---------------UGGGgGGC- -5'
9092 5' -67 NC_002512.2 + 215460 0.66 0.558748
Target:  5'- aGCgGGucaucGCCGGCGUCGaCU-CCUCCUGg -3'
miRNA:   3'- gCGgCU-----CGGCCGCGGC-GAuGGGGGGC- -5'
9092 5' -67 NC_002512.2 + 203202 0.66 0.558748
Target:  5'- cCGCC-AGCaCGGCguacgucuGCCGCUucgagcccGCCCCCg- -3'
miRNA:   3'- -GCGGcUCG-GCCG--------CGGCGA--------UGGGGGgc -5'
9092 5' -67 NC_002512.2 + 72793 0.66 0.558748
Target:  5'- uCGCCGGGaCgGGCccGCCGUgggcGCCggcgaCCCCGg -3'
miRNA:   3'- -GCGGCUC-GgCCG--CGGCGa---UGG-----GGGGC- -5'
9092 5' -67 NC_002512.2 + 109362 0.66 0.558748
Target:  5'- cCGCCGGG--GGaaaGCCGCgcCUCCCCGu -3'
miRNA:   3'- -GCGGCUCggCCg--CGGCGauGGGGGGC- -5'
9092 5' -67 NC_002512.2 + 98773 0.66 0.558748
Target:  5'- gCGCCGAGaagguggcCCGGCGCaccacgucaGgUACCCCggcggCCGg -3'
miRNA:   3'- -GCGGCUC--------GGCCGCGg--------CgAUGGGG-----GGC- -5'
9092 5' -67 NC_002512.2 + 171316 0.66 0.558748
Target:  5'- uGuuGAGCacCGGCGUCGUgUAUCCUCUGg -3'
miRNA:   3'- gCggCUCG--GCCGCGGCG-AUGGGGGGC- -5'
9092 5' -67 NC_002512.2 + 15655 0.66 0.558748
Target:  5'- gCGgCGAGCCGacgaGCCGCcugACgUCCCGg -3'
miRNA:   3'- -GCgGCUCGGCcg--CGGCGa--UGgGGGGC- -5'
9092 5' -67 NC_002512.2 + 73817 0.66 0.558748
Target:  5'- uGCCGGcGcCCGGCGUCGaugaGCCUCgCCGu -3'
miRNA:   3'- gCGGCU-C-GGCCGCGGCga--UGGGG-GGC- -5'
9092 5' -67 NC_002512.2 + 125025 0.66 0.558748
Target:  5'- cCGCgGGGCCgaGGuCGCCGUgagggacgaUACCUUCCGc -3'
miRNA:   3'- -GCGgCUCGG--CC-GCGGCG---------AUGGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.