Results 1 - 20 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9093 | 3' | -54.5 | NC_002512.2 | + | 11442 | 0.66 | 0.983027 |
Target: 5'- cGGGgA-CGCCGCGGACGgGgGCCg-- -3' miRNA: 3'- aCUUgUaGCGGUGCCUGCgC-UGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 67698 | 0.66 | 0.983027 |
Target: 5'- gUGAugGUgaugugugUGaCCgACGGACGCGGCCg-- -3' miRNA: 3'- -ACUugUA--------GC-GG-UGCCUGCGCUGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 50722 | 0.66 | 0.983027 |
Target: 5'- cGAAgGUCGCCAgGGAguuCGagGAgCUGCu -3' miRNA: 3'- aCUUgUAGCGGUgCCU---GCg-CUgGAUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 104947 | 0.66 | 0.983027 |
Target: 5'- -cGGCGUCGgCGCGG-CGCcGGCCUc- -3' miRNA: 3'- acUUGUAGCgGUGCCuGCG-CUGGAug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 211957 | 0.66 | 0.983027 |
Target: 5'- aGAGgGUCgGCUGCuuccgucaGGACGCGGCCg-- -3' miRNA: 3'- aCUUgUAG-CGGUG--------CCUGCGCUGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 39558 | 0.66 | 0.983027 |
Target: 5'- gGGACggUGCCAaGGGCGgCGACggGCg -3' miRNA: 3'- aCUUGuaGCGGUgCCUGC-GCUGgaUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 83374 | 0.66 | 0.983027 |
Target: 5'- gUGGACgAUCGUCGCGGagacccGCGCGuCCc-- -3' miRNA: 3'- -ACUUG-UAGCGGUGCC------UGCGCuGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 228111 | 0.66 | 0.983027 |
Target: 5'- aGGGCGUCgGCCGCaacgucgugcuGGGCGcCGACggGCg -3' miRNA: 3'- aCUUGUAG-CGGUG-----------CCUGC-GCUGgaUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 101986 | 0.66 | 0.981057 |
Target: 5'- --cGCcUC-CCACGGuCGCGACCUuCg -3' miRNA: 3'- acuUGuAGcGGUGCCuGCGCUGGAuG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 185331 | 0.66 | 0.981057 |
Target: 5'- cGucuGCGUCGCCGCccgGGugGCcGCCg-- -3' miRNA: 3'- aCu--UGUAGCGGUG---CCugCGcUGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 214179 | 0.66 | 0.981057 |
Target: 5'- cGAGCccgucAUCGUCGCGGAgGagGACCcGCu -3' miRNA: 3'- aCUUG-----UAGCGGUGCCUgCg-CUGGaUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 92083 | 0.66 | 0.981057 |
Target: 5'- cGGACG--GCCGcCGGACGCGcgGCCcGCc -3' miRNA: 3'- aCUUGUagCGGU-GCCUGCGC--UGGaUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 96133 | 0.66 | 0.981057 |
Target: 5'- cGucguCGUCGUCGCGGGCGCucuCCUc- -3' miRNA: 3'- aCuu--GUAGCGGUGCCUGCGcu-GGAug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 149820 | 0.66 | 0.981057 |
Target: 5'- aGGACAgCGagGCGGAgaGCGACCcGCg -3' miRNA: 3'- aCUUGUaGCggUGCCUg-CGCUGGaUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 189234 | 0.66 | 0.981057 |
Target: 5'- cGucCGUCGCCgucGCGGACGUcACCg-- -3' miRNA: 3'- aCuuGUAGCGG---UGCCUGCGcUGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 129703 | 0.66 | 0.981057 |
Target: 5'- gGAgGCGcUCGCCACcgaGGACGgGcgguACCUGCu -3' miRNA: 3'- aCU-UGU-AGCGGUG---CCUGCgC----UGGAUG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 222811 | 0.66 | 0.981057 |
Target: 5'- gGAACugggagaGCCACGGcUGCGACUUccgACg -3' miRNA: 3'- aCUUGuag----CGGUGCCuGCGCUGGA---UG- -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 59313 | 0.66 | 0.980851 |
Target: 5'- gGGACAcgGCgACGGAggagaacUGCGACCUGg -3' miRNA: 3'- aCUUGUagCGgUGCCU-------GCGCUGGAUg -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 30917 | 0.66 | 0.980851 |
Target: 5'- cGGACAUcacgcgaCGCgACGcACGCGACCg-- -3' miRNA: 3'- aCUUGUA-------GCGgUGCcUGCGCUGGaug -5' |
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9093 | 3' | -54.5 | NC_002512.2 | + | 102496 | 0.66 | 0.978922 |
Target: 5'- -cGGCGUcguuccCGCCGCGGGaguCGCGGCCg-- -3' miRNA: 3'- acUUGUA------GCGGUGCCU---GCGCUGGaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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