miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9093 3' -54.5 NC_002512.2 + 11442 0.66 0.983027
Target:  5'- cGGGgA-CGCCGCGGACGgGgGCCg-- -3'
miRNA:   3'- aCUUgUaGCGGUGCCUGCgC-UGGaug -5'
9093 3' -54.5 NC_002512.2 + 67698 0.66 0.983027
Target:  5'- gUGAugGUgaugugugUGaCCgACGGACGCGGCCg-- -3'
miRNA:   3'- -ACUugUA--------GC-GG-UGCCUGCGCUGGaug -5'
9093 3' -54.5 NC_002512.2 + 50722 0.66 0.983027
Target:  5'- cGAAgGUCGCCAgGGAguuCGagGAgCUGCu -3'
miRNA:   3'- aCUUgUAGCGGUgCCU---GCg-CUgGAUG- -5'
9093 3' -54.5 NC_002512.2 + 104947 0.66 0.983027
Target:  5'- -cGGCGUCGgCGCGG-CGCcGGCCUc- -3'
miRNA:   3'- acUUGUAGCgGUGCCuGCG-CUGGAug -5'
9093 3' -54.5 NC_002512.2 + 211957 0.66 0.983027
Target:  5'- aGAGgGUCgGCUGCuuccgucaGGACGCGGCCg-- -3'
miRNA:   3'- aCUUgUAG-CGGUG--------CCUGCGCUGGaug -5'
9093 3' -54.5 NC_002512.2 + 39558 0.66 0.983027
Target:  5'- gGGACggUGCCAaGGGCGgCGACggGCg -3'
miRNA:   3'- aCUUGuaGCGGUgCCUGC-GCUGgaUG- -5'
9093 3' -54.5 NC_002512.2 + 83374 0.66 0.983027
Target:  5'- gUGGACgAUCGUCGCGGagacccGCGCGuCCc-- -3'
miRNA:   3'- -ACUUG-UAGCGGUGCC------UGCGCuGGaug -5'
9093 3' -54.5 NC_002512.2 + 228111 0.66 0.983027
Target:  5'- aGGGCGUCgGCCGCaacgucgugcuGGGCGcCGACggGCg -3'
miRNA:   3'- aCUUGUAG-CGGUG-----------CCUGC-GCUGgaUG- -5'
9093 3' -54.5 NC_002512.2 + 101986 0.66 0.981057
Target:  5'- --cGCcUC-CCACGGuCGCGACCUuCg -3'
miRNA:   3'- acuUGuAGcGGUGCCuGCGCUGGAuG- -5'
9093 3' -54.5 NC_002512.2 + 185331 0.66 0.981057
Target:  5'- cGucuGCGUCGCCGCccgGGugGCcGCCg-- -3'
miRNA:   3'- aCu--UGUAGCGGUG---CCugCGcUGGaug -5'
9093 3' -54.5 NC_002512.2 + 214179 0.66 0.981057
Target:  5'- cGAGCccgucAUCGUCGCGGAgGagGACCcGCu -3'
miRNA:   3'- aCUUG-----UAGCGGUGCCUgCg-CUGGaUG- -5'
9093 3' -54.5 NC_002512.2 + 92083 0.66 0.981057
Target:  5'- cGGACG--GCCGcCGGACGCGcgGCCcGCc -3'
miRNA:   3'- aCUUGUagCGGU-GCCUGCGC--UGGaUG- -5'
9093 3' -54.5 NC_002512.2 + 96133 0.66 0.981057
Target:  5'- cGucguCGUCGUCGCGGGCGCucuCCUc- -3'
miRNA:   3'- aCuu--GUAGCGGUGCCUGCGcu-GGAug -5'
9093 3' -54.5 NC_002512.2 + 149820 0.66 0.981057
Target:  5'- aGGACAgCGagGCGGAgaGCGACCcGCg -3'
miRNA:   3'- aCUUGUaGCggUGCCUg-CGCUGGaUG- -5'
9093 3' -54.5 NC_002512.2 + 189234 0.66 0.981057
Target:  5'- cGucCGUCGCCgucGCGGACGUcACCg-- -3'
miRNA:   3'- aCuuGUAGCGG---UGCCUGCGcUGGaug -5'
9093 3' -54.5 NC_002512.2 + 129703 0.66 0.981057
Target:  5'- gGAgGCGcUCGCCACcgaGGACGgGcgguACCUGCu -3'
miRNA:   3'- aCU-UGU-AGCGGUG---CCUGCgC----UGGAUG- -5'
9093 3' -54.5 NC_002512.2 + 222811 0.66 0.981057
Target:  5'- gGAACugggagaGCCACGGcUGCGACUUccgACg -3'
miRNA:   3'- aCUUGuag----CGGUGCCuGCGCUGGA---UG- -5'
9093 3' -54.5 NC_002512.2 + 59313 0.66 0.980851
Target:  5'- gGGACAcgGCgACGGAggagaacUGCGACCUGg -3'
miRNA:   3'- aCUUGUagCGgUGCCU-------GCGCUGGAUg -5'
9093 3' -54.5 NC_002512.2 + 30917 0.66 0.980851
Target:  5'- cGGACAUcacgcgaCGCgACGcACGCGACCg-- -3'
miRNA:   3'- aCUUGUA-------GCGgUGCcUGCGCUGGaug -5'
9093 3' -54.5 NC_002512.2 + 102496 0.66 0.978922
Target:  5'- -cGGCGUcguuccCGCCGCGGGaguCGCGGCCg-- -3'
miRNA:   3'- acUUGUA------GCGGUGCCU---GCGCUGGaug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.