miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9093 5' -55.1 NC_002512.2 + 94138 0.66 0.970663
Target:  5'- -cGUGCGUCuCGUUCUUUUgucggucGCCCUAu -3'
miRNA:   3'- ucCAUGCAGcGCAAGAAGGa------CGGGAU- -5'
9093 5' -55.1 NC_002512.2 + 30425 0.66 0.964575
Target:  5'- cGGGcguCGUCGCGgccCUgaacgcgggCCUGCCCa- -3'
miRNA:   3'- -UCCau-GCAGCGCaa-GAa--------GGACGGGau -5'
9093 5' -55.1 NC_002512.2 + 102167 0.66 0.964575
Target:  5'- uGGGU-CGUCGaucgCUUCCccGCCCUGa -3'
miRNA:   3'- -UCCAuGCAGCgcaaGAAGGa-CGGGAU- -5'
9093 5' -55.1 NC_002512.2 + 221771 0.66 0.961221
Target:  5'- uGGGcggcCGUCGUGUcCUggcgCCUGCUCUAc -3'
miRNA:   3'- -UCCau--GCAGCGCAaGAa---GGACGGGAU- -5'
9093 5' -55.1 NC_002512.2 + 216369 0.66 0.957653
Target:  5'- uGGUGCGcCGCagcagCUUCCUGgCCg- -3'
miRNA:   3'- uCCAUGCaGCGcaa--GAAGGACgGGau -5'
9093 5' -55.1 NC_002512.2 + 138461 0.67 0.945624
Target:  5'- gAGGUugGcCGCGUUCggcaCCUcGCUCg- -3'
miRNA:   3'- -UCCAugCaGCGCAAGaa--GGA-CGGGau -5'
9093 5' -55.1 NC_002512.2 + 125722 0.67 0.936469
Target:  5'- cAGGUagACG-CGCGc-CUUCCUGUCCg- -3'
miRNA:   3'- -UCCA--UGCaGCGCaaGAAGGACGGGau -5'
9093 5' -55.1 NC_002512.2 + 153951 0.67 0.931545
Target:  5'- cGGGgACGUCGgGUUCUUCgggGUCCg- -3'
miRNA:   3'- -UCCaUGCAGCgCAAGAAGga-CGGGau -5'
9093 5' -55.1 NC_002512.2 + 99168 0.68 0.903438
Target:  5'- cGGaucUACGUCGCcagUCUggUCCUcGCCCUGa -3'
miRNA:   3'- uCC---AUGCAGCGca-AGA--AGGA-CGGGAU- -5'
9093 5' -55.1 NC_002512.2 + 205613 0.7 0.830735
Target:  5'- cGGGaUGcCGUCGCcgccGUcCUUCCUGCCCg- -3'
miRNA:   3'- -UCC-AU-GCAGCG----CAaGAAGGACGGGau -5'
9093 5' -55.1 NC_002512.2 + 117333 0.72 0.711496
Target:  5'- --cUACGUCgGCGUcgagaacuUCUUCCUGCCCg- -3'
miRNA:   3'- uccAUGCAG-CGCA--------AGAAGGACGGGau -5'
9093 5' -55.1 NC_002512.2 + 134577 0.79 0.354582
Target:  5'- cGGUACGgcggccCGCGguccgUCUUCCUGCCCg- -3'
miRNA:   3'- uCCAUGCa-----GCGCa----AGAAGGACGGGau -5'
9093 5' -55.1 NC_002512.2 + 122462 1.06 0.007293
Target:  5'- cAGGUACGUCGCGUUCUUCCUGCCCUAc -3'
miRNA:   3'- -UCCAUGCAGCGCAAGAAGGACGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.