miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 208444 0.67 0.984449
Target:  5'- gCCCCCGAucGAGucggacGUCGGgAUGGcgGAc -3'
miRNA:   3'- gGGGGGCUuuUUC------UAGCCgUGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 97816 0.67 0.984449
Target:  5'- -aCUCCGggGAcgcggaguAGAgggCGGCGCGGggGAa -3'
miRNA:   3'- ggGGGGCuuUU--------UCUa--GCCGUGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 19418 0.67 0.984449
Target:  5'- gCUCCUCGAGAGacAGAUCGGgacgcaucCACGGg-- -3'
miRNA:   3'- -GGGGGGCUUUU--UCUAGCC--------GUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 153061 0.67 0.984272
Target:  5'- nUCCCCGGuc-GGGUCGGCggucgagGCGGcGAu -3'
miRNA:   3'- gGGGGGCUuuuUCUAGCCG-------UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 63563 0.67 0.984272
Target:  5'- aCCCUCCgGAGGGGGAUCcuggccaGGUugGGcGAc -3'
miRNA:   3'- -GGGGGG-CUUUUUCUAG-------CCGugCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 206428 0.67 0.982611
Target:  5'- aUCUCCGugcguAGcgaCGGCGCGGUGAa -3'
miRNA:   3'- gGGGGGCuuuu-UCua-GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 67980 0.67 0.982611
Target:  5'- gUCCgCCGGAGGAGGgcCGGCGCGaG-GAg -3'
miRNA:   3'- -GGGgGGCUUUUUCUa-GCCGUGC-CaCU- -5'
9095 3' -53.4 NC_002512.2 + 21692 0.67 0.982611
Target:  5'- gCCCCCCGAucucAAGAgccaGGCgaACGGg-- -3'
miRNA:   3'- -GGGGGGCUuu--UUCUag--CCG--UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 131350 0.67 0.982611
Target:  5'- -aCgCCGGGcGAGGUcccagcCGGCGCGGUGGc -3'
miRNA:   3'- ggGgGGCUUuUUCUA------GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 171982 0.67 0.982611
Target:  5'- uCCCgCCuuAGGAGGUgGGCG-GGUGAa -3'
miRNA:   3'- -GGGgGGcuUUUUCUAgCCGUgCCACU- -5'
9095 3' -53.4 NC_002512.2 + 91294 0.67 0.982611
Target:  5'- aCCCgCCUGAAGGAGGugUCGGCgGCGcaGAg -3'
miRNA:   3'- -GGG-GGGCUUUUUCU--AGCCG-UGCcaCU- -5'
9095 3' -53.4 NC_002512.2 + 102688 0.67 0.982611
Target:  5'- uCCCCCCGucucGGGcGUCGGCgACGcaGUGGc -3'
miRNA:   3'- -GGGGGGCuuu-UUC-UAGCCG-UGC--CACU- -5'
9095 3' -53.4 NC_002512.2 + 6794 0.67 0.981432
Target:  5'- cCUCCCCGucGAcgcagccgcggacccGGGucUCGGCcACGGUGGc -3'
miRNA:   3'- -GGGGGGCuuUU---------------UCU--AGCCG-UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 216330 0.67 0.980613
Target:  5'- -gCCCCGAcgc-GGUCGGCGgcucgaucuUGGUGAa -3'
miRNA:   3'- ggGGGGCUuuuuCUAGCCGU---------GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 88271 0.67 0.980613
Target:  5'- uCUCCCCGAAAucGAcCGcCACGGUc- -3'
miRNA:   3'- -GGGGGGCUUUuuCUaGCcGUGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 19849 0.67 0.980613
Target:  5'- gUCCCCGGAgcgGAAGGcgcgaCGGUACGGcUGGa -3'
miRNA:   3'- gGGGGGCUU---UUUCUa----GCCGUGCC-ACU- -5'
9095 3' -53.4 NC_002512.2 + 99954 0.67 0.980613
Target:  5'- gCCgCCGGugccuGAUCGGCcuggccccGCGGUGGc -3'
miRNA:   3'- gGGgGGCUuuuu-CUAGCCG--------UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 118950 0.67 0.980404
Target:  5'- -gCCCCGGuguucuccaccGAGAGcgCGGCccuggugACGGUGGg -3'
miRNA:   3'- ggGGGGCU-----------UUUUCuaGCCG-------UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 16389 0.67 0.978449
Target:  5'- gCCCUCGAAGucGAcgGGCGCGcaGUGAg -3'
miRNA:   3'- gGGGGGCUUUuuCUagCCGUGC--CACU- -5'
9095 3' -53.4 NC_002512.2 + 12070 0.67 0.978449
Target:  5'- gCCCgCCGucGAcGAUCGGgACGGcGAc -3'
miRNA:   3'- -GGGgGGCuuUUuCUAGCCgUGCCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.