miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 5' -64.3 NC_002512.2 + 128718 0.66 0.67049
Target:  5'- gGGCaGGUguGGaGGCUGggaGACGGCGGAc -3'
miRNA:   3'- -CCG-CCG--CC-CCGGCaacCUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 21061 0.66 0.67049
Target:  5'- cGGCGcGUGaGGGCgcacGGGCGGCGGu- -3'
miRNA:   3'- -CCGC-CGC-CCCGgcaaCCUGCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 207606 0.66 0.67049
Target:  5'- -aCGGCGGcGGCUGcUGcGGCGGCGa-- -3'
miRNA:   3'- ccGCCGCC-CCGGCaAC-CUGCCGCcuc -5'
9095 5' -64.3 NC_002512.2 + 104888 0.66 0.67049
Target:  5'- cGGCGcGaCGGGGCCGgguccagGGACagguuGGCGaAGu -3'
miRNA:   3'- -CCGC-C-GCCCCGGCaa-----CCUG-----CCGCcUC- -5'
9095 5' -64.3 NC_002512.2 + 210414 0.66 0.67049
Target:  5'- cGCGGCGGGGaggcgagguCCGggaUGuGGCGuCGGGGa -3'
miRNA:   3'- cCGCCGCCCC---------GGCa--AC-CUGCcGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 122754 0.66 0.67049
Target:  5'- aGGgGGCGcccGGGCCGgaGGACgaggacgaGGacgaGGAGg -3'
miRNA:   3'- -CCgCCGC---CCCGGCaaCCUG--------CCg---CCUC- -5'
9095 5' -64.3 NC_002512.2 + 53316 0.66 0.67049
Target:  5'- -aCGGUGcuGGCCGUgaaccggcUGGugacgGCGGCGGAGa -3'
miRNA:   3'- ccGCCGCc-CCGGCA--------ACC-----UGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 14622 0.66 0.67049
Target:  5'- aGUGGCGGaGGCCGcgcuugaGGAaGGCGGc- -3'
miRNA:   3'- cCGCCGCC-CCGGCaa-----CCUgCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 223911 0.66 0.669562
Target:  5'- aGCGGCGcGGGCgagagguCGagccGGACGG-GGAGg -3'
miRNA:   3'- cCGCCGC-CCCG-------GCaa--CCUGCCgCCUC- -5'
9095 5' -64.3 NC_002512.2 + 5225 0.66 0.667706
Target:  5'- cGGCGGCGggaaagucgaacucGGGCgCGUaGGccgaggccGCGGCGGcGa -3'
miRNA:   3'- -CCGCCGC--------------CCCG-GCAaCC--------UGCCGCCuC- -5'
9095 5' -64.3 NC_002512.2 + 143534 0.66 0.664919
Target:  5'- uGGCGGCcucgucgccgucGGcGGCCgcgcgucuccccgcgGgcGGGcCGGCGGAGa -3'
miRNA:   3'- -CCGCCG------------CC-CCGG---------------CaaCCU-GCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 81281 0.66 0.661201
Target:  5'- cGGCaGgGGGGCgGUccGGGCcuGCGGGGu -3'
miRNA:   3'- -CCGcCgCCCCGgCAa-CCUGc-CGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 4414 0.66 0.661201
Target:  5'- cGCGGUcgacGGcGGCUGcUGGuagacCGGCGGGGu -3'
miRNA:   3'- cCGCCG----CC-CCGGCaACCu----GCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 92542 0.66 0.661201
Target:  5'- cGGCcGCGGcGGCCGcgGcGACGacguCGGAGg -3'
miRNA:   3'- -CCGcCGCC-CCGGCaaC-CUGCc---GCCUC- -5'
9095 5' -64.3 NC_002512.2 + 95693 0.66 0.661201
Target:  5'- gGGCcuccGGCGGGGaCGggGGGcCGGgaGGGGa -3'
miRNA:   3'- -CCG----CCGCCCCgGCaaCCU-GCCg-CCUC- -5'
9095 5' -64.3 NC_002512.2 + 116999 0.66 0.655618
Target:  5'- cGCGGCGaccgacgagaacgccGGGCCGgaGGAC-GCGGc- -3'
miRNA:   3'- cCGCCGC---------------CCCGGCaaCCUGcCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 119100 0.66 0.651892
Target:  5'- cGGCggaccuGGUGGGcGUCGUguaccGGCGGCGGGa -3'
miRNA:   3'- -CCG------CCGCCC-CGGCAac---CUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 78551 0.66 0.651892
Target:  5'- uGGCgccGGCcGGGCCGcgaGGGCGGaUGGAa -3'
miRNA:   3'- -CCG---CCGcCCCGGCaa-CCUGCC-GCCUc -5'
9095 5' -64.3 NC_002512.2 + 93603 0.66 0.651892
Target:  5'- cGUGGuCGGGgaagaacgGCCGUUGGACGGgcgcgugcuCGGuGg -3'
miRNA:   3'- cCGCC-GCCC--------CGGCAACCUGCC---------GCCuC- -5'
9095 5' -64.3 NC_002512.2 + 89590 0.66 0.651892
Target:  5'- gGGUGGCGGGauGUCGcgGGAaCGuccGCGGGGc -3'
miRNA:   3'- -CCGCCGCCC--CGGCaaCCU-GC---CGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.