Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9096 | 3' | -55.3 | NC_002512.2 | + | 166142 | 0.66 | 0.959101 |
Target: 5'- aUGGCCGa--GCGCUACCucGGCcAGCGCa -3' miRNA: 3'- cAUUGGCcgaCGUGAUGG--UCG-UCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 110578 | 0.66 | 0.959101 |
Target: 5'- --uGCCGGgucaggaucucCUGaCACUucAUCAGCAGCAUg -3' miRNA: 3'- cauUGGCC-----------GAC-GUGA--UGGUCGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 225040 | 0.66 | 0.958736 |
Target: 5'- -gAACCccgcgauGGCcGCGCUcCuCGGCGGCGCg -3' miRNA: 3'- caUUGG-------CCGaCGUGAuG-GUCGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 169546 | 0.66 | 0.955357 |
Target: 5'- ---cCCGGCUGC----CCGGCGGCGu -3' miRNA: 3'- cauuGGCCGACGugauGGUCGUCGUg -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 105705 | 0.66 | 0.955357 |
Target: 5'- ---cCCGGCgGacgaGCaGCCAGguGCACu -3' miRNA: 3'- cauuGGCCGaCg---UGaUGGUCguCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 225165 | 0.66 | 0.955357 |
Target: 5'- aGUcgUCGGCgGCG-UugCAGCAGCAg -3' miRNA: 3'- -CAuuGGCCGaCGUgAugGUCGUCGUg -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 43075 | 0.66 | 0.955357 |
Target: 5'- aGgcACCGGUcccgggGCGCgGCgAGCAGCGg -3' miRNA: 3'- -CauUGGCCGa-----CGUGaUGgUCGUCGUg -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 64572 | 0.66 | 0.955357 |
Target: 5'- -aGGCCGuaGCcGCACagcgACgAGCGGCGCg -3' miRNA: 3'- caUUGGC--CGaCGUGa---UGgUCGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 9511 | 0.66 | 0.955357 |
Target: 5'- -cGGCCGGCcccaGCACgg-CGGCGGCGg -3' miRNA: 3'- caUUGGCCGa---CGUGaugGUCGUCGUg -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 89529 | 0.66 | 0.951388 |
Target: 5'- --uGCCGGUugucggcgcggaUGUACU-CguGCAGCGCg -3' miRNA: 3'- cauUGGCCG------------ACGUGAuGguCGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 112440 | 0.66 | 0.951388 |
Target: 5'- --cACCGGCgacagcuucuggUGCAUcacgGCCAGCgucAGCACc -3' miRNA: 3'- cauUGGCCG------------ACGUGa---UGGUCG---UCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 59892 | 0.66 | 0.951388 |
Target: 5'- -gGACCGGUUccggcGCACgGCgAGCGGgACg -3' miRNA: 3'- caUUGGCCGA-----CGUGaUGgUCGUCgUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 128296 | 0.66 | 0.951388 |
Target: 5'- -cGugCGGgUGCACgcCCGagucGCGGCACc -3' miRNA: 3'- caUugGCCgACGUGauGGU----CGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 41253 | 0.66 | 0.94719 |
Target: 5'- --cGCCGGC-GCcCUugCGGCccgAGCGCu -3' miRNA: 3'- cauUGGCCGaCGuGAugGUCG---UCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 46404 | 0.66 | 0.94719 |
Target: 5'- cGUAGgCGGCccgcaGCACgGCCuugguGGCGGCGCc -3' miRNA: 3'- -CAUUgGCCGa----CGUGaUGG-----UCGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 15120 | 0.66 | 0.94719 |
Target: 5'- -cGACCGGCgccGgACUGCgA-CGGCACg -3' miRNA: 3'- caUUGGCCGa--CgUGAUGgUcGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 115957 | 0.66 | 0.94719 |
Target: 5'- aGgcGCCuGgUGCACUucuACCAgguGCGGCGCg -3' miRNA: 3'- -CauUGGcCgACGUGA---UGGU---CGUCGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 37916 | 0.66 | 0.94719 |
Target: 5'- uGUAcACCGGCU-CAUcgUACCGGCA-CACg -3' miRNA: 3'- -CAU-UGGCCGAcGUG--AUGGUCGUcGUG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 225455 | 0.66 | 0.94719 |
Target: 5'- ---cCCGGCaccccGCcgguCUACCAGCAGC-Cg -3' miRNA: 3'- cauuGGCCGa----CGu---GAUGGUCGUCGuG- -5' |
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9096 | 3' | -55.3 | NC_002512.2 | + | 145205 | 0.66 | 0.94719 |
Target: 5'- -cGACCccgGGCUGCgggACgaggACCAGUgccGGCGCg -3' miRNA: 3'- caUUGG---CCGACG---UGa---UGGUCG---UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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