miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9096 3' -55.3 NC_002512.2 + 110578 0.66 0.959101
Target:  5'- --uGCCGGgucaggaucucCUGaCACUucAUCAGCAGCAUg -3'
miRNA:   3'- cauUGGCC-----------GAC-GUGA--UGGUCGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 166142 0.66 0.959101
Target:  5'- aUGGCCGa--GCGCUACCucGGCcAGCGCa -3'
miRNA:   3'- cAUUGGCcgaCGUGAUGG--UCG-UCGUG- -5'
9096 3' -55.3 NC_002512.2 + 225040 0.66 0.958736
Target:  5'- -gAACCccgcgauGGCcGCGCUcCuCGGCGGCGCg -3'
miRNA:   3'- caUUGG-------CCGaCGUGAuG-GUCGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 169546 0.66 0.955357
Target:  5'- ---cCCGGCUGC----CCGGCGGCGu -3'
miRNA:   3'- cauuGGCCGACGugauGGUCGUCGUg -5'
9096 3' -55.3 NC_002512.2 + 9511 0.66 0.955357
Target:  5'- -cGGCCGGCcccaGCACgg-CGGCGGCGg -3'
miRNA:   3'- caUUGGCCGa---CGUGaugGUCGUCGUg -5'
9096 3' -55.3 NC_002512.2 + 64572 0.66 0.955357
Target:  5'- -aGGCCGuaGCcGCACagcgACgAGCGGCGCg -3'
miRNA:   3'- caUUGGC--CGaCGUGa---UGgUCGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 43075 0.66 0.955357
Target:  5'- aGgcACCGGUcccgggGCGCgGCgAGCAGCGg -3'
miRNA:   3'- -CauUGGCCGa-----CGUGaUGgUCGUCGUg -5'
9096 3' -55.3 NC_002512.2 + 225165 0.66 0.955357
Target:  5'- aGUcgUCGGCgGCG-UugCAGCAGCAg -3'
miRNA:   3'- -CAuuGGCCGaCGUgAugGUCGUCGUg -5'
9096 3' -55.3 NC_002512.2 + 105705 0.66 0.955357
Target:  5'- ---cCCGGCgGacgaGCaGCCAGguGCACu -3'
miRNA:   3'- cauuGGCCGaCg---UGaUGGUCguCGUG- -5'
9096 3' -55.3 NC_002512.2 + 112440 0.66 0.951388
Target:  5'- --cACCGGCgacagcuucuggUGCAUcacgGCCAGCgucAGCACc -3'
miRNA:   3'- cauUGGCCG------------ACGUGa---UGGUCG---UCGUG- -5'
9096 3' -55.3 NC_002512.2 + 59892 0.66 0.951388
Target:  5'- -gGACCGGUUccggcGCACgGCgAGCGGgACg -3'
miRNA:   3'- caUUGGCCGA-----CGUGaUGgUCGUCgUG- -5'
9096 3' -55.3 NC_002512.2 + 128296 0.66 0.951388
Target:  5'- -cGugCGGgUGCACgcCCGagucGCGGCACc -3'
miRNA:   3'- caUugGCCgACGUGauGGU----CGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 89529 0.66 0.951388
Target:  5'- --uGCCGGUugucggcgcggaUGUACU-CguGCAGCGCg -3'
miRNA:   3'- cauUGGCCG------------ACGUGAuGguCGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 225455 0.66 0.94719
Target:  5'- ---cCCGGCaccccGCcgguCUACCAGCAGC-Cg -3'
miRNA:   3'- cauuGGCCGa----CGu---GAUGGUCGUCGuG- -5'
9096 3' -55.3 NC_002512.2 + 37916 0.66 0.94719
Target:  5'- uGUAcACCGGCU-CAUcgUACCGGCA-CACg -3'
miRNA:   3'- -CAU-UGGCCGAcGUG--AUGGUCGUcGUG- -5'
9096 3' -55.3 NC_002512.2 + 115957 0.66 0.94719
Target:  5'- aGgcGCCuGgUGCACUucuACCAgguGCGGCGCg -3'
miRNA:   3'- -CauUGGcCgACGUGA---UGGU---CGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 145205 0.66 0.94719
Target:  5'- -cGACCccgGGCUGCgggACgaggACCAGUgccGGCGCg -3'
miRNA:   3'- caUUGG---CCGACG---UGa---UGGUCG---UCGUG- -5'
9096 3' -55.3 NC_002512.2 + 15120 0.66 0.94719
Target:  5'- -cGACCGGCgccGgACUGCgA-CGGCACg -3'
miRNA:   3'- caUUGGCCGa--CgUGAUGgUcGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 46404 0.66 0.94719
Target:  5'- cGUAGgCGGCccgcaGCACgGCCuugguGGCGGCGCc -3'
miRNA:   3'- -CAUUgGCCGa----CGUGaUGG-----UCGUCGUG- -5'
9096 3' -55.3 NC_002512.2 + 41253 0.66 0.94719
Target:  5'- --cGCCGGC-GCcCUugCGGCccgAGCGCu -3'
miRNA:   3'- cauUGGCCGaCGuGAugGUCG---UCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.