miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9096 5' -62 NC_002512.2 + 227200 0.66 0.802686
Target:  5'- aGGcGCuCCCGcgcgcggaccaggagGCGGCGGAccgggaggcgcgGCGGacgGGCGGGc -3'
miRNA:   3'- -CC-CG-GGGC---------------UGCCGUCU------------CGCU---UCGCCC- -5'
9096 5' -62 NC_002512.2 + 203723 0.66 0.799385
Target:  5'- cGGCCUgCGACacggagacacggGGCGGAGauGAGCGGa -3'
miRNA:   3'- cCCGGG-GCUG------------CCGUCUCgcUUCGCCc -5'
9096 5' -62 NC_002512.2 + 128573 0.66 0.799385
Target:  5'- cGGCCuCCGGgGGCcGAcccuGCGAgaGGcCGGGa -3'
miRNA:   3'- cCCGG-GGCUgCCGuCU----CGCU--UC-GCCC- -5'
9096 5' -62 NC_002512.2 + 38928 0.66 0.799385
Target:  5'- gGGGCCgCCG-CGGCGGGcgcccGCGugcgccCGGGu -3'
miRNA:   3'- -CCCGG-GGCuGCCGUCU-----CGCuuc---GCCC- -5'
9096 5' -62 NC_002512.2 + 210679 0.66 0.799385
Target:  5'- uGGUCCaagcgcaACGGCAaGGCGccGCGGGa -3'
miRNA:   3'- cCCGGGgc-----UGCCGUcUCGCuuCGCCC- -5'
9096 5' -62 NC_002512.2 + 18828 0.66 0.799385
Target:  5'- -aGCUCCugGACGaGC-GAGCGGagguAGCGGGg -3'
miRNA:   3'- ccCGGGG--CUGC-CGuCUCGCU----UCGCCC- -5'
9096 5' -62 NC_002512.2 + 193873 0.66 0.799385
Target:  5'- cGGaCgCGGCGGUGGAcgacGCgGGAGCGGGu -3'
miRNA:   3'- cCCgGgGCUGCCGUCU----CG-CUUCGCCC- -5'
9096 5' -62 NC_002512.2 + 32189 0.66 0.799385
Target:  5'- cGGGCCaUgGGCaGGCAGGGCGGguguccguugaGGaGGGc -3'
miRNA:   3'- -CCCGG-GgCUG-CCGUCUCGCU-----------UCgCCC- -5'
9096 5' -62 NC_002512.2 + 191236 0.66 0.798557
Target:  5'- cGGCCUCcucgguacccgcgGACaGGUAGAGa-GGGCGGGg -3'
miRNA:   3'- cCCGGGG-------------CUG-CCGUCUCgcUUCGCCC- -5'
9096 5' -62 NC_002512.2 + 3417 0.66 0.791045
Target:  5'- cGGGCCCCGGCcuccucccGCcucGCGggGCuGGu -3'
miRNA:   3'- -CCCGGGGCUGc-------CGucuCGCuuCGcCC- -5'
9096 5' -62 NC_002512.2 + 128373 0.66 0.791045
Target:  5'- cGGuGCCCCcugugcuacGACgGGgAGAGCGAcucguccggGGaCGGGg -3'
miRNA:   3'- -CC-CGGGG---------CUG-CCgUCUCGCU---------UC-GCCC- -5'
9096 5' -62 NC_002512.2 + 10714 0.66 0.791045
Target:  5'- cGGUagCCGACGGCGGcgaaguccucGGCGgAGGUGGa -3'
miRNA:   3'- cCCGg-GGCUGCCGUC----------UCGC-UUCGCCc -5'
9096 5' -62 NC_002512.2 + 226462 0.66 0.791045
Target:  5'- -aGCCCCGcgaGGCgGGAG-GAGGcCGGGg -3'
miRNA:   3'- ccCGGGGCug-CCG-UCUCgCUUC-GCCC- -5'
9096 5' -62 NC_002512.2 + 147044 0.66 0.791045
Target:  5'- uGGaCCUG-CGcGCGGAcCGggGCGGGa -3'
miRNA:   3'- cCCgGGGCuGC-CGUCUcGCuuCGCCC- -5'
9096 5' -62 NC_002512.2 + 94454 0.66 0.791045
Target:  5'- cGGCCUCGGCcaggaagcgaccGGCGGAGgaGAuccAGcCGGGg -3'
miRNA:   3'- cCCGGGGCUG------------CCGUCUCg-CU---UC-GCCC- -5'
9096 5' -62 NC_002512.2 + 138032 0.66 0.791045
Target:  5'- cGGCCUCGGgGGCAuGAGC----CGGGa -3'
miRNA:   3'- cCCGGGGCUgCCGU-CUCGcuucGCCC- -5'
9096 5' -62 NC_002512.2 + 74591 0.66 0.791045
Target:  5'- cGGCCauggucacggCCGACGcggacCGGAGCGGAGCGcGa -3'
miRNA:   3'- cCCGG----------GGCUGCc----GUCUCGCUUCGC-Cc -5'
9096 5' -62 NC_002512.2 + 65715 0.66 0.791045
Target:  5'- aGGCCCCGGaGaUAGGGCGggGUGu- -3'
miRNA:   3'- cCCGGGGCUgCcGUCUCGCuuCGCcc -5'
9096 5' -62 NC_002512.2 + 13739 0.66 0.791045
Target:  5'- aGGGgCgCGACGcCGGuGUGA-GCGGGa -3'
miRNA:   3'- -CCCgGgGCUGCcGUCuCGCUuCGCCC- -5'
9096 5' -62 NC_002512.2 + 44897 0.66 0.791045
Target:  5'- cGGGCCgcagcgcucacgUCGACGGCc--GCGcGGCGGa -3'
miRNA:   3'- -CCCGG------------GGCUGCCGucuCGCuUCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.