Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9096 | 5' | -62 | NC_002512.2 | + | 227200 | 0.66 | 0.802686 |
Target: 5'- aGGcGCuCCCGcgcgcggaccaggagGCGGCGGAccgggaggcgcgGCGGacgGGCGGGc -3' miRNA: 3'- -CC-CG-GGGC---------------UGCCGUCU------------CGCU---UCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 193873 | 0.66 | 0.799385 |
Target: 5'- cGGaCgCGGCGGUGGAcgacGCgGGAGCGGGu -3' miRNA: 3'- cCCgGgGCUGCCGUCU----CG-CUUCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 210679 | 0.66 | 0.799385 |
Target: 5'- uGGUCCaagcgcaACGGCAaGGCGccGCGGGa -3' miRNA: 3'- cCCGGGgc-----UGCCGUcUCGCuuCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 32189 | 0.66 | 0.799385 |
Target: 5'- cGGGCCaUgGGCaGGCAGGGCGGguguccguugaGGaGGGc -3' miRNA: 3'- -CCCGG-GgCUG-CCGUCUCGCU-----------UCgCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 38928 | 0.66 | 0.799385 |
Target: 5'- gGGGCCgCCG-CGGCGGGcgcccGCGugcgccCGGGu -3' miRNA: 3'- -CCCGG-GGCuGCCGUCU-----CGCuuc---GCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 128573 | 0.66 | 0.799385 |
Target: 5'- cGGCCuCCGGgGGCcGAcccuGCGAgaGGcCGGGa -3' miRNA: 3'- cCCGG-GGCUgCCGuCU----CGCU--UC-GCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 18828 | 0.66 | 0.799385 |
Target: 5'- -aGCUCCugGACGaGC-GAGCGGagguAGCGGGg -3' miRNA: 3'- ccCGGGG--CUGC-CGuCUCGCU----UCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 203723 | 0.66 | 0.799385 |
Target: 5'- cGGCCUgCGACacggagacacggGGCGGAGauGAGCGGa -3' miRNA: 3'- cCCGGG-GCUG------------CCGUCUCgcUUCGCCc -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 191236 | 0.66 | 0.798557 |
Target: 5'- cGGCCUCcucgguacccgcgGACaGGUAGAGa-GGGCGGGg -3' miRNA: 3'- cCCGGGG-------------CUG-CCGUCUCgcUUCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 94454 | 0.66 | 0.791045 |
Target: 5'- cGGCCUCGGCcaggaagcgaccGGCGGAGgaGAuccAGcCGGGg -3' miRNA: 3'- cCCGGGGCUG------------CCGUCUCg-CU---UC-GCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 44897 | 0.66 | 0.791045 |
Target: 5'- cGGGCCgcagcgcucacgUCGACGGCc--GCGcGGCGGa -3' miRNA: 3'- -CCCGG------------GGCUGCCGucuCGCuUCGCCc -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 147044 | 0.66 | 0.791045 |
Target: 5'- uGGaCCUG-CGcGCGGAcCGggGCGGGa -3' miRNA: 3'- cCCgGGGCuGC-CGUCUcGCuuCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 3417 | 0.66 | 0.791045 |
Target: 5'- cGGGCCCCGGCcuccucccGCcucGCGggGCuGGu -3' miRNA: 3'- -CCCGGGGCUGc-------CGucuCGCuuCGcCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 65715 | 0.66 | 0.791045 |
Target: 5'- aGGCCCCGGaGaUAGGGCGggGUGu- -3' miRNA: 3'- cCCGGGGCUgCcGUCUCGCuuCGCcc -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 226462 | 0.66 | 0.791045 |
Target: 5'- -aGCCCCGcgaGGCgGGAG-GAGGcCGGGg -3' miRNA: 3'- ccCGGGGCug-CCG-UCUCgCUUC-GCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 13739 | 0.66 | 0.791045 |
Target: 5'- aGGGgCgCGACGcCGGuGUGA-GCGGGa -3' miRNA: 3'- -CCCgGgGCUGCcGUCuCGCUuCGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 138032 | 0.66 | 0.791045 |
Target: 5'- cGGCCUCGGgGGCAuGAGC----CGGGa -3' miRNA: 3'- cCCGGGGCUgCCGU-CUCGcuucGCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 128373 | 0.66 | 0.791045 |
Target: 5'- cGGuGCCCCcugugcuacGACgGGgAGAGCGAcucguccggGGaCGGGg -3' miRNA: 3'- -CC-CGGGG---------CUG-CCgUCUCGCU---------UC-GCCC- -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 74591 | 0.66 | 0.791045 |
Target: 5'- cGGCCauggucacggCCGACGcggacCGGAGCGGAGCGcGa -3' miRNA: 3'- cCCGG----------GGCUGCc----GUCUCGCUUCGC-Cc -5' |
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9096 | 5' | -62 | NC_002512.2 | + | 10714 | 0.66 | 0.791045 |
Target: 5'- cGGUagCCGACGGCGGcgaaguccucGGCGgAGGUGGa -3' miRNA: 3'- cCCGg-GGCUGCCGUC----------UCGC-UUCGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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