miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
91 5' -57.8 AC_000006.1 + 29956 1.1 0.000257
Target:  5'- cGCGGACCCUGAGACCCUGGAAGGACAu -3'
miRNA:   3'- -CGCCUGGGACUCUGGGACCUUCCUGU- -5'
91 5' -57.8 AC_000006.1 + 2793 0.71 0.216472
Target:  5'- cUGGACUgUGAGGCCCgcuUGGAugacuuuucagAGGACGg -3'
miRNA:   3'- cGCCUGGgACUCUGGG---ACCU-----------UCCUGU- -5'
91 5' -57.8 AC_000006.1 + 23615 0.67 0.396571
Target:  5'- cCGcGACCCccAGGCCCUGGAgcAGcGGCGc -3'
miRNA:   3'- cGC-CUGGGacUCUGGGACCU--UC-CUGU- -5'
91 5' -57.8 AC_000006.1 + 8000 0.66 0.424917
Target:  5'- cGUGGgacucACCCUGGGGCuCCUcGA-GGACGg -3'
miRNA:   3'- -CGCC-----UGGGACUCUG-GGAcCUuCCUGU- -5'
91 5' -57.8 AC_000006.1 + 17144 0.66 0.434631
Target:  5'- cCGGACCUaUGGGAacaaggCCUGGAauaguagcacGGGGCAg -3'
miRNA:   3'- cGCCUGGG-ACUCUg-----GGACCU----------UCCUGU- -5'
91 5' -57.8 AC_000006.1 + 7494 0.66 0.474722
Target:  5'- cGCGGGCCaUGAGGgUCUGGAgcucgucgcgaaAGaGGCGg -3'
miRNA:   3'- -CGCCUGGgACUCUgGGACCU------------UC-CUGU- -5'
91 5' -57.8 AC_000006.1 + 18546 0.66 0.434631
Target:  5'- cGCGGuaGCCCggcgucGGGAUaaUGGAAGGAUg -3'
miRNA:   3'- -CGCC--UGGGa-----CUCUGggACCUUCCUGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.