miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9103 3' -56.1 NC_002512.2 + 124330 0.66 0.958263
Target:  5'- -gGCGGACGUGCUgcgGCUGUACcuGaucuucgacccccggGCGCCg -3'
miRNA:   3'- ugUGCCUGUGCGA---CGACAUG--U---------------CGCGG- -5'
9103 3' -56.1 NC_002512.2 + 27094 0.66 0.956807
Target:  5'- gACGCGGugaGCAUGCUcGCUcGggUGGUGCCc -3'
miRNA:   3'- -UGUGCC---UGUGCGA-CGA-CauGUCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 52796 0.66 0.956807
Target:  5'- uCGCGGAgACGCagcggggGCUG-ACGGaCGCg -3'
miRNA:   3'- uGUGCCUgUGCGa------CGACaUGUC-GCGg -5'
9103 3' -56.1 NC_002512.2 + 180210 0.66 0.956807
Target:  5'- gACAUGcACugGCUGCcGgcCcGCGCCc -3'
miRNA:   3'- -UGUGCcUGugCGACGaCauGuCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 103697 0.66 0.956807
Target:  5'- -gGCGGACGCgGCgGgaGgg-GGCGCCg -3'
miRNA:   3'- ugUGCCUGUG-CGaCgaCaugUCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 167077 0.66 0.956807
Target:  5'- gGC-CGcGACAUGCUGCUGgcCAccuccGCGUa -3'
miRNA:   3'- -UGuGC-CUGUGCGACGACauGU-----CGCGg -5'
9103 3' -56.1 NC_002512.2 + 104791 0.66 0.956807
Target:  5'- gGCGgGGuccGCGCGCggcggGUUGUACuccagGGCGUCg -3'
miRNA:   3'- -UGUgCC---UGUGCGa----CGACAUG-----UCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 131306 0.66 0.953018
Target:  5'- aGCGCGGACGaccCGCcGCccga-GGCGCCc -3'
miRNA:   3'- -UGUGCCUGU---GCGaCGacaugUCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 181306 0.66 0.953018
Target:  5'- uACAgGGACACcagGCUccgGUACAGCuccaGCCg -3'
miRNA:   3'- -UGUgCCUGUGcgaCGA---CAUGUCG----CGG- -5'
9103 3' -56.1 NC_002512.2 + 95951 0.66 0.953018
Target:  5'- gACGCGGGCcgucgggcCGCcGCcGUACAGCaggagguagGCCa -3'
miRNA:   3'- -UGUGCCUGu-------GCGaCGaCAUGUCG---------CGG- -5'
9103 3' -56.1 NC_002512.2 + 120824 0.66 0.953018
Target:  5'- cGCGCGGGgAC-CUGCUGgGCGacGCGUa -3'
miRNA:   3'- -UGUGCCUgUGcGACGACaUGU--CGCGg -5'
9103 3' -56.1 NC_002512.2 + 134568 0.66 0.953018
Target:  5'- uCGgGGACuucgcccgcCGCUGCUu--CGGCGCCu -3'
miRNA:   3'- uGUgCCUGu--------GCGACGAcauGUCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 228450 0.66 0.953018
Target:  5'- -aGCGGACGCGCgua--UAUAGaCGCCg -3'
miRNA:   3'- ugUGCCUGUGCGacgacAUGUC-GCGG- -5'
9103 3' -56.1 NC_002512.2 + 95834 0.66 0.953018
Target:  5'- uGCAcCGGACGCGCagGUUGaACAugGCCg -3'
miRNA:   3'- -UGU-GCCUGUGCGa-CGACaUGUcgCGG- -5'
9103 3' -56.1 NC_002512.2 + 101112 0.66 0.953018
Target:  5'- aGCGCGcGGCGCgGCgugcGCUcGcGCAGCGCg -3'
miRNA:   3'- -UGUGC-CUGUG-CGa---CGA-CaUGUCGCGg -5'
9103 3' -56.1 NC_002512.2 + 94828 0.66 0.953018
Target:  5'- gGCGCccGACAgGCagggGCUGUAC-GCGUCa -3'
miRNA:   3'- -UGUGc-CUGUgCGa---CGACAUGuCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 154648 0.66 0.952627
Target:  5'- gACGCGGcCGCGCUcgucaccGCg--ACGGCGUUa -3'
miRNA:   3'- -UGUGCCuGUGCGA-------CGacaUGUCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 12863 0.66 0.949012
Target:  5'- gACGCuGGACAgGCUGCUGaa----GCCg -3'
miRNA:   3'- -UGUG-CCUGUgCGACGACaugucgCGG- -5'
9103 3' -56.1 NC_002512.2 + 67544 0.66 0.949012
Target:  5'- -aACGGACGagGUcGgUGgACAGCGCCa -3'
miRNA:   3'- ugUGCCUGUg-CGaCgACaUGUCGCGG- -5'
9103 3' -56.1 NC_002512.2 + 10591 0.66 0.949012
Target:  5'- cCGCGGACgACGaaGCgGgccACGGCGUCg -3'
miRNA:   3'- uGUGCCUG-UGCgaCGaCa--UGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.