miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9103 5' -52.7 NC_002512.2 + 102957 0.66 0.989841
Target:  5'- -gGGCGCgggcGggUAUCGcCAGCCCGGc -3'
miRNA:   3'- uaCCGCGa---CuaGUAGUuGUUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 107108 0.66 0.989841
Target:  5'- -cGGCGCcc-UCGggggaGACGACCCGAUa -3'
miRNA:   3'- uaCCGCGacuAGUag---UUGUUGGGCUA- -5'
9103 5' -52.7 NC_002512.2 + 133909 0.66 0.989439
Target:  5'- -gGGCGCUGGccuaccuccugcugUaCggCGGCGGCCCGAc -3'
miRNA:   3'- uaCCGCGACU--------------A-GuaGUUGUUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 13698 0.66 0.988452
Target:  5'- -cGGCGgUGAUCA-CGggcGCGAuCCCGAg -3'
miRNA:   3'- uaCCGCgACUAGUaGU---UGUU-GGGCUa -5'
9103 5' -52.7 NC_002512.2 + 7435 0.66 0.988452
Target:  5'- -cGGCGCgaGGUUggCcGCGGCCCGGg -3'
miRNA:   3'- uaCCGCGa-CUAGuaGuUGUUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 120998 0.66 0.988452
Target:  5'- -gGGCGUacgGGUCGuUCGACGAucCCCGGUc -3'
miRNA:   3'- uaCCGCGa--CUAGU-AGUUGUU--GGGCUA- -5'
9103 5' -52.7 NC_002512.2 + 215428 0.66 0.98692
Target:  5'- -gGGCGCcuucaucaaGAUCGUCAGCc-CCCGGg -3'
miRNA:   3'- uaCCGCGa--------CUAGUAGUUGuuGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 150649 0.66 0.98692
Target:  5'- gGUGGCGCUGcgCAgcUCGA--GCCuCGAg -3'
miRNA:   3'- -UACCGCGACuaGU--AGUUguUGG-GCUa -5'
9103 5' -52.7 NC_002512.2 + 177315 0.66 0.98692
Target:  5'- -aGGUGCUGcUC-UCuguCGGCCCGGUa -3'
miRNA:   3'- uaCCGCGACuAGuAGuu-GUUGGGCUA- -5'
9103 5' -52.7 NC_002512.2 + 108691 0.66 0.985237
Target:  5'- -gGGCGCUG-UCGgcCAGC-GCCCGGa -3'
miRNA:   3'- uaCCGCGACuAGUa-GUUGuUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 156391 0.66 0.985237
Target:  5'- -gGGUGUUGGUU-UCAugAACCUGAg -3'
miRNA:   3'- uaCCGCGACUAGuAGUugUUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 28637 0.66 0.985237
Target:  5'- cGUGGCGCgGAUCAaaCAcuacuGCGACCgCGAc -3'
miRNA:   3'- -UACCGCGaCUAGUa-GU-----UGUUGG-GCUa -5'
9103 5' -52.7 NC_002512.2 + 221133 0.66 0.982808
Target:  5'- -cGGCGCUGAggaccgcguccccgUCGUCGACGGgCgGGc -3'
miRNA:   3'- uaCCGCGACU--------------AGUAGUUGUUgGgCUa -5'
9103 5' -52.7 NC_002512.2 + 135486 0.66 0.981381
Target:  5'- -aGGCGg----CAUCAACAGCCUGAUc -3'
miRNA:   3'- uaCCGCgacuaGUAGUUGUUGGGCUA- -5'
9103 5' -52.7 NC_002512.2 + 120790 0.66 0.981381
Target:  5'- cUGGCGCUGAcggccacggUGUCGACgGACCUGGc -3'
miRNA:   3'- uACCGCGACUa--------GUAGUUG-UUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 43676 0.67 0.979191
Target:  5'- -cGGcCGCggcGUCAUCGGCG-CCCGAg -3'
miRNA:   3'- uaCC-GCGac-UAGUAGUUGUuGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 106058 0.67 0.976815
Target:  5'- -gGGCGCaGAUCGUgCGACAGCgCCu-- -3'
miRNA:   3'- uaCCGCGaCUAGUA-GUUGUUG-GGcua -5'
9103 5' -52.7 NC_002512.2 + 112805 0.67 0.976815
Target:  5'- uUGGUGUUGAaggCGUUGACGgccACCCGGUu -3'
miRNA:   3'- uACCGCGACUa--GUAGUUGU---UGGGCUA- -5'
9103 5' -52.7 NC_002512.2 + 77403 0.67 0.974246
Target:  5'- cGUGGCGCcGucgCGUCAcAgGACCCGGg -3'
miRNA:   3'- -UACCGCGaCua-GUAGU-UgUUGGGCUa -5'
9103 5' -52.7 NC_002512.2 + 155368 0.67 0.974246
Target:  5'- -cGGCGCUcgaGGUCGgggCGGCGGCgCCGGc -3'
miRNA:   3'- uaCCGCGA---CUAGUa--GUUGUUG-GGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.