miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9105 3' -51.2 NC_002512.2 + 45023 0.66 0.997697
Target:  5'- aCAUAGAauaUGCACCUGggUgUCGACUg -3'
miRNA:   3'- -GUGUCUca-ACGUGGGCaaGaAGCUGA- -5'
9105 3' -51.2 NC_002512.2 + 140291 0.66 0.997697
Target:  5'- uCAUGGAGgc-CACCCGgcUCUUCGugUc -3'
miRNA:   3'- -GUGUCUCaacGUGGGCa-AGAAGCugA- -5'
9105 3' -51.2 NC_002512.2 + 158735 0.66 0.997697
Target:  5'- gAUAGAa--GCAUCCGUUCcaucgUCGACUa -3'
miRNA:   3'- gUGUCUcaaCGUGGGCAAGa----AGCUGA- -5'
9105 3' -51.2 NC_002512.2 + 102464 0.66 0.997697
Target:  5'- uCGCGGAGgagggcGCGCCCGUcgCggUGGCg -3'
miRNA:   3'- -GUGUCUCaa----CGUGGGCAa-GaaGCUGa -5'
9105 3' -51.2 NC_002512.2 + 113773 0.66 0.997275
Target:  5'- gCACAGcGaUUGCACUCGUcCUUCcGCUg -3'
miRNA:   3'- -GUGUCuC-AACGUGGGCAaGAAGcUGA- -5'
9105 3' -51.2 NC_002512.2 + 138094 0.67 0.9941
Target:  5'- cCACcGAGUccuccaGCCCGaUCUUCGACUu -3'
miRNA:   3'- -GUGuCUCAacg---UGGGCaAGAAGCUGA- -5'
9105 3' -51.2 NC_002512.2 + 194640 0.67 0.9941
Target:  5'- aCACGGg---GCACCCGUcCgaggUCGACg -3'
miRNA:   3'- -GUGUCucaaCGUGGGCAaGa---AGCUGa -5'
9105 3' -51.2 NC_002512.2 + 124330 0.67 0.9941
Target:  5'- gGCGGAcGUgcugcggcUGUACCUGaUCUUCGACc -3'
miRNA:   3'- gUGUCU-CA--------ACGUGGGCaAGAAGCUGa -5'
9105 3' -51.2 NC_002512.2 + 225585 0.68 0.991073
Target:  5'- ---cGAGggGCGCCgGgUCUUCGACc -3'
miRNA:   3'- guguCUCaaCGUGGgCaAGAAGCUGa -5'
9105 3' -51.2 NC_002512.2 + 108983 0.68 0.991073
Target:  5'- aGCAGGGccgUGUACCUGcUCgUCGGCg -3'
miRNA:   3'- gUGUCUCa--ACGUGGGCaAGaAGCUGa -5'
9105 3' -51.2 NC_002512.2 + 158326 0.68 0.989828
Target:  5'- gGCGcGAGUccGCGCuCCGgaccgUCUUCGACa -3'
miRNA:   3'- gUGU-CUCAa-CGUG-GGCa----AGAAGCUGa -5'
9105 3' -51.2 NC_002512.2 + 109997 0.68 0.988452
Target:  5'- -------cUGCACCCGUUCUUcCGGCa -3'
miRNA:   3'- gugucucaACGUGGGCAAGAA-GCUGa -5'
9105 3' -51.2 NC_002512.2 + 93367 0.69 0.976957
Target:  5'- gCACcucccUGUACCUGUUCUUCGACg -3'
miRNA:   3'- -GUGucucaACGUGGGCAAGAAGCUGa -5'
9105 3' -51.2 NC_002512.2 + 116069 1.08 0.014513
Target:  5'- aCACAGAGUUGCACCCGUUCUUCGACUu -3'
miRNA:   3'- -GUGUCUCAACGUGGGCAAGAAGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.