miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9105 5' -54.2 NC_002512.2 + 92584 0.66 0.982361
Target:  5'- cGCGGcCGGGAGGGgcggcgguccCGAG-GCcGGUCGCg -3'
miRNA:   3'- -UGUC-GCCUUCCU----------GCUCaCG-UUAGCGa -5'
9105 5' -54.2 NC_002512.2 + 227118 0.66 0.982361
Target:  5'- uCAGaCGGggGaGCGGGUGCAGaccagaCGCa -3'
miRNA:   3'- uGUC-GCCuuCcUGCUCACGUUa-----GCGa -5'
9105 5' -54.2 NC_002512.2 + 171636 0.66 0.982361
Target:  5'- gACAGCG--AGGACGAGUaucgGCccuGUUGCg -3'
miRNA:   3'- -UGUCGCcuUCCUGCUCA----CGu--UAGCGa -5'
9105 5' -54.2 NC_002512.2 + 40115 0.66 0.982361
Target:  5'- uACGGCGGGAGGACGGauuuUGUccccCGCc -3'
miRNA:   3'- -UGUCGCCUUCCUGCUc---ACGuua-GCGa -5'
9105 5' -54.2 NC_002512.2 + 221257 0.66 0.982361
Target:  5'- cGCGGCGGAAGu-CGGGggacGCGGggCGCg -3'
miRNA:   3'- -UGUCGCCUUCcuGCUCa---CGUUa-GCGa -5'
9105 5' -54.2 NC_002512.2 + 75773 0.66 0.982361
Target:  5'- cGCGGagccCGGGAGGACGGG-GCAga-GCg -3'
miRNA:   3'- -UGUC----GCCUUCCUGCUCaCGUuagCGa -5'
9105 5' -54.2 NC_002512.2 + 160907 0.66 0.982361
Target:  5'- gGCGGcCGGGgcaaGGGACGcG-GaCAGUCGCUg -3'
miRNA:   3'- -UGUC-GCCU----UCCUGCuCaC-GUUAGCGA- -5'
9105 5' -54.2 NC_002512.2 + 112670 0.66 0.980312
Target:  5'- aGCGGUGGAAGGGgauCGGGgucagGUAGUCcuGCa -3'
miRNA:   3'- -UGUCGCCUUCCU---GCUCa----CGUUAG--CGa -5'
9105 5' -54.2 NC_002512.2 + 105497 0.66 0.980312
Target:  5'- uGCAGggucaGGGAGGACGGGggGCucUgGCUg -3'
miRNA:   3'- -UGUCg----CCUUCCUGCUCa-CGuuAgCGA- -5'
9105 5' -54.2 NC_002512.2 + 175763 0.66 0.978091
Target:  5'- gGCAGCGGAAcaGCGGGgugGUcacGUCGCa -3'
miRNA:   3'- -UGUCGCCUUccUGCUCa--CGu--UAGCGa -5'
9105 5' -54.2 NC_002512.2 + 57936 0.66 0.978091
Target:  5'- gGCgAGCGGGAGauaGACGGGcGCGG-CGCg -3'
miRNA:   3'- -UG-UCGCCUUC---CUGCUCaCGUUaGCGa -5'
9105 5' -54.2 NC_002512.2 + 88479 0.66 0.978091
Target:  5'- gACcGCGGuguGGGucgauccCGAGUGCGggAUCGCg -3'
miRNA:   3'- -UGuCGCCu--UCCu------GCUCACGU--UAGCGa -5'
9105 5' -54.2 NC_002512.2 + 74452 0.66 0.978091
Target:  5'- aGCAGCGGGGacacgacGACGGG-GCAcucccgGUCGCa -3'
miRNA:   3'- -UGUCGCCUUc------CUGCUCaCGU------UAGCGa -5'
9105 5' -54.2 NC_002512.2 + 145213 0.66 0.97569
Target:  5'- gGCuGCGGGacgAGGACcAGUGCcggCGCg -3'
miRNA:   3'- -UGuCGCCU---UCCUGcUCACGuuaGCGa -5'
9105 5' -54.2 NC_002512.2 + 94474 0.66 0.97569
Target:  5'- cCGGCGGAGGaGAuccagcCGGGgacGCAGUCGUc -3'
miRNA:   3'- uGUCGCCUUC-CU------GCUCa--CGUUAGCGa -5'
9105 5' -54.2 NC_002512.2 + 139308 0.66 0.975689
Target:  5'- cCGGgGGAAGGAgacCGGG-GCcGUCGCc -3'
miRNA:   3'- uGUCgCCUUCCU---GCUCaCGuUAGCGa -5'
9105 5' -54.2 NC_002512.2 + 111183 0.66 0.973101
Target:  5'- -uGGCGGcuGGGGAUGGGcaCGAUCGCg -3'
miRNA:   3'- ugUCGCC--UUCCUGCUCacGUUAGCGa -5'
9105 5' -54.2 NC_002512.2 + 86678 0.66 0.973101
Target:  5'- gACGGCGcgcgaGggGGACGGcaccacccucGUGCAGggcgCGCa -3'
miRNA:   3'- -UGUCGC-----CuuCCUGCU----------CACGUUa---GCGa -5'
9105 5' -54.2 NC_002512.2 + 108355 0.66 0.973101
Target:  5'- cGCGGaCGGAcGGGCGGGUGgggGAUCGg- -3'
miRNA:   3'- -UGUC-GCCUuCCUGCUCACg--UUAGCga -5'
9105 5' -54.2 NC_002512.2 + 74942 0.66 0.973101
Target:  5'- gACcGCGGGagagcgacGGGACGAGaGCGGUcCGCc -3'
miRNA:   3'- -UGuCGCCU--------UCCUGCUCaCGUUA-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.