miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 182628 0.66 0.887154
Target:  5'- -gUGGCCGcgcgaucuucUCCAGCGCCuGCGUC-UCGg -3'
miRNA:   3'- cuGCCGGU----------AGGUCGUGG-UGCGGuAGU- -5'
9107 3' -58.1 NC_002512.2 + 96096 0.66 0.887154
Target:  5'- cGACcGUCGUCCc-CGCCGcCGCCGUCGu -3'
miRNA:   3'- -CUGcCGGUAGGucGUGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 225467 0.66 0.887154
Target:  5'- -cCGGUCuaCCAGCAgC-CGCCGUCGa -3'
miRNA:   3'- cuGCCGGuaGGUCGUgGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 210840 0.66 0.887154
Target:  5'- cACGGCCGUCUgggGGCugcuCCGCGagAUCGa -3'
miRNA:   3'- cUGCCGGUAGG---UCGu---GGUGCggUAGU- -5'
9107 3' -58.1 NC_002512.2 + 134345 0.66 0.887154
Target:  5'- cGCGGCCGagcUCCAGaC-CCGCaCCGUCc -3'
miRNA:   3'- cUGCCGGU---AGGUC-GuGGUGcGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 169078 0.66 0.887154
Target:  5'- cGGCGGCggCGUCgCGGC-CCGCGUCcUCGu -3'
miRNA:   3'- -CUGCCG--GUAG-GUCGuGGUGCGGuAGU- -5'
9107 3' -58.1 NC_002512.2 + 175816 0.66 0.887154
Target:  5'- cGGCGGCUccgcucGUCCguGGCGCCuccugccgccuCGCCGUUAu -3'
miRNA:   3'- -CUGCCGG------UAGG--UCGUGGu----------GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 180286 0.66 0.885154
Target:  5'- cGGCGGCguUCCcgucgcccucgacaGGCGCagcgGCGUCGUCAg -3'
miRNA:   3'- -CUGCCGguAGG--------------UCGUGg---UGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 135723 0.66 0.883134
Target:  5'- cGGCGGCCuUCUucauGCucagggucugccuccGCCGCGUCAUCc -3'
miRNA:   3'- -CUGCCGGuAGGu---CG---------------UGGUGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 17723 0.66 0.881096
Target:  5'- gGACGGCCcagccgucccgccgCCAGUGCC-CGCCGa-- -3'
miRNA:   3'- -CUGCCGGua------------GGUCGUGGuGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 122008 0.66 0.880412
Target:  5'- cGGCGGCCAaggugacgaCGGCcuCCACGCgGUCc -3'
miRNA:   3'- -CUGCCGGUag-------GUCGu-GGUGCGgUAGu -5'
9107 3' -58.1 NC_002512.2 + 178704 0.66 0.880412
Target:  5'- cGCGGCCG-CCGcGUugCugGCCAg-- -3'
miRNA:   3'- cUGCCGGUaGGU-CGugGugCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 222655 0.66 0.880412
Target:  5'- cGACGGCCggCCGG-GCCgagggGCGCC-UCGa -3'
miRNA:   3'- -CUGCCGGuaGGUCgUGG-----UGCGGuAGU- -5'
9107 3' -58.1 NC_002512.2 + 88963 0.66 0.880412
Target:  5'- ---cGCCGUCCcgAGcCGCCGCGUCGUCc -3'
miRNA:   3'- cugcCGGUAGG--UC-GUGGUGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 108196 0.66 0.880412
Target:  5'- gGGCGGCCAcgucUCCuauGCACUcggcggcgACGUgAUCAa -3'
miRNA:   3'- -CUGCCGGU----AGGu--CGUGG--------UGCGgUAGU- -5'
9107 3' -58.1 NC_002512.2 + 222457 0.66 0.880412
Target:  5'- cGCGGCCAaCCucGCGCCGgcccuCGCgGUCGu -3'
miRNA:   3'- cUGCCGGUaGGu-CGUGGU-----GCGgUAGU- -5'
9107 3' -58.1 NC_002512.2 + 110630 0.66 0.880412
Target:  5'- --gGGCCAgcuUCC-GCACgUACGUCAUCAc -3'
miRNA:   3'- cugCCGGU---AGGuCGUG-GUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 39994 0.66 0.880412
Target:  5'- cGCcGCCGUCCu-CGCCGcCGCCGUCu -3'
miRNA:   3'- cUGcCGGUAGGucGUGGU-GCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 10547 0.66 0.880412
Target:  5'- gGAC-GCCGggcagCCGGCggGCCACGCCGa-- -3'
miRNA:   3'- -CUGcCGGUa----GGUCG--UGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 134045 0.66 0.876268
Target:  5'- -cCGGCCAuguucaaccugcgcgUCCGGUGCa--GCCAUCAc -3'
miRNA:   3'- cuGCCGGU---------------AGGUCGUGgugCGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.