miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 60564 0.66 0.883786
Target:  5'- gGCCGuggaACGCGAuuuCUGGCUGuaCGCGa -3'
miRNA:   3'- -CGGCuag-UGCGCUu--GGCCGACc-GCGU- -5'
9107 5' -58.9 NC_002512.2 + 225798 0.66 0.883786
Target:  5'- gGCCGggC-CGCGGgcgGCCGGgUGGCc-- -3'
miRNA:   3'- -CGGCuaGuGCGCU---UGGCCgACCGcgu -5'
9107 5' -58.9 NC_002512.2 + 99893 0.66 0.883786
Target:  5'- -aCGggCACGCGGcgccGCCGGCgcucccGGCGg- -3'
miRNA:   3'- cgGCuaGUGCGCU----UGGCCGa-----CCGCgu -5'
9107 5' -58.9 NC_002512.2 + 64760 0.66 0.883786
Target:  5'- cGCCGAaCAgGCGGAugacguuccCCGcgggagagauguGCUGGCGCc -3'
miRNA:   3'- -CGGCUaGUgCGCUU---------GGC------------CGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 179871 0.66 0.883123
Target:  5'- aCCG-UCACGaCGAcgugcACCGGCucccucuucuucuUGGCGUAc -3'
miRNA:   3'- cGGCuAGUGC-GCU-----UGGCCG-------------ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 224144 0.66 0.877065
Target:  5'- cGCCGGgaggcggaCGCGUGAGgCggGGCgggGGCGCGc -3'
miRNA:   3'- -CGGCUa-------GUGCGCUUgG--CCGa--CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 131990 0.66 0.877065
Target:  5'- --aGGUCGCGUGGGCCGcCccgGGCGCc -3'
miRNA:   3'- cggCUAGUGCGCUUGGCcGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 19857 0.66 0.877065
Target:  5'- aGCgGAagGCGCGAcgguaCGGCUGGaCGUu -3'
miRNA:   3'- -CGgCUagUGCGCUug---GCCGACC-GCGu -5'
9107 5' -58.9 NC_002512.2 + 45241 0.66 0.87501
Target:  5'- cGCgGcgCcCGCGGacucgccgucggccGCCGGCggGGCGCu -3'
miRNA:   3'- -CGgCuaGuGCGCU--------------UGGCCGa-CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 112152 0.66 0.870847
Target:  5'- aGgCGGUCGacgGCGAGCCGGCgcucgagcccgcacGCGCGg -3'
miRNA:   3'- -CgGCUAGUg--CGCUUGGCCGac------------CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 74252 0.66 0.870146
Target:  5'- cGCCGAa-GCGCc-GCCGGCUcuccucgcacaGGCGCc -3'
miRNA:   3'- -CGGCUagUGCGcuUGGCCGA-----------CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 53670 0.66 0.870146
Target:  5'- -aUGAUcCugGCGAAacagaacaGGCUGGCGUAc -3'
miRNA:   3'- cgGCUA-GugCGCUUgg------CCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 196198 0.66 0.870146
Target:  5'- gGCCGGguccCugGCGAGCCucc-GGCGCGu -3'
miRNA:   3'- -CGGCUa---GugCGCUUGGccgaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 16721 0.66 0.863034
Target:  5'- uGCCGAcCACGCaGAGCUGacccgccaugaGCgGGUGCGa -3'
miRNA:   3'- -CGGCUaGUGCG-CUUGGC-----------CGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 96305 0.66 0.863034
Target:  5'- cGCCGccgCGgGCGGGCCGGUcGcCGCAc -3'
miRNA:   3'- -CGGCua-GUgCGCUUGGCCGaCcGCGU- -5'
9107 5' -58.9 NC_002512.2 + 222535 0.66 0.863034
Target:  5'- cGCCG-UCGCgGUGGGCCGGgCUacGGCGa- -3'
miRNA:   3'- -CGGCuAGUG-CGCUUGGCC-GA--CCGCgu -5'
9107 5' -58.9 NC_002512.2 + 143556 0.66 0.863034
Target:  5'- gGCCGcgcGUCucccCGCGGGCgGGCcGGCGgAg -3'
miRNA:   3'- -CGGC---UAGu---GCGCUUGgCCGaCCGCgU- -5'
9107 5' -58.9 NC_002512.2 + 45432 0.66 0.862312
Target:  5'- cGCCGGcCGCgGCGAcucccuguccgacGCCGGC-GGCGg- -3'
miRNA:   3'- -CGGCUaGUG-CGCU-------------UGGCCGaCCGCgu -5'
9107 5' -58.9 NC_002512.2 + 81295 0.66 0.862312
Target:  5'- uCCGggCcUGCGGgguggguuuguugGCCaGCUGGCGCAg -3'
miRNA:   3'- cGGCuaGuGCGCU-------------UGGcCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 201981 0.66 0.860864
Target:  5'- aGCCGGUaccgaUACGCGGugUGGCucgucucggacaggUGGCGgGg -3'
miRNA:   3'- -CGGCUA-----GUGCGCUugGCCG--------------ACCGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.