miRNA display CGI


Results 21 - 40 of 509 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 132453 0.66 0.545989
Target:  5'- cCCgGCGGCGGGUccggggagcgcgcguCUcucCCCGgCCUccgcgucgucgCGCCCg -3'
miRNA:   3'- -GG-CGCCGCCCG---------------GA---GGGCgGGA-----------GCGGG- -5'
9112 3' -68 NC_002512.2 + 197665 0.66 0.545989
Target:  5'- cCCGacgaGGUGGacGCCcuccucaacggacaCCCGCCCUgccUGCCCa -3'
miRNA:   3'- -GGCg---CCGCC--CGGa-------------GGGCGGGA---GCGGG- -5'
9112 3' -68 NC_002512.2 + 136810 0.66 0.542452
Target:  5'- aCGC-GCGG--CUCUCGCUCUCGUCCc -3'
miRNA:   3'- gGCGcCGCCcgGAGGGCGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 19178 0.66 0.542452
Target:  5'- aCGCugaggaaGCGGGUgauCUCCCGCggcgCCUUGCCg -3'
miRNA:   3'- gGCGc------CGCCCG---GAGGGCG----GGAGCGGg -5'
9112 3' -68 NC_002512.2 + 147642 0.66 0.542452
Target:  5'- aCgGCGGCGGcCgCUCCCGCUaccgUCaccgGCCCc -3'
miRNA:   3'- -GgCGCCGCCcG-GAGGGCGGg---AG----CGGG- -5'
9112 3' -68 NC_002512.2 + 55674 0.66 0.542452
Target:  5'- gCCG-GGCGGGgCgcugaacgCgCCGCUgUUCGCCCa -3'
miRNA:   3'- -GGCgCCGCCCgGa-------G-GGCGG-GAGCGGG- -5'
9112 3' -68 NC_002512.2 + 157685 0.66 0.542452
Target:  5'- gCUGCuGauGGaCUUCCgCGCCUUCGCCUc -3'
miRNA:   3'- -GGCGcCgcCC-GGAGG-GCGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 25021 0.66 0.542452
Target:  5'- gCCGuCGGuCGcGGaCCUCcacgaggaccgaCCGCCgUCGUCCu -3'
miRNA:   3'- -GGC-GCC-GC-CC-GGAG------------GGCGGgAGCGGG- -5'
9112 3' -68 NC_002512.2 + 103471 0.66 0.542452
Target:  5'- aCGCGGCucGGGUCUCggcggcggCCGCggaccgCUCGCCg -3'
miRNA:   3'- gGCGCCG--CCCGGAG--------GGCGg-----GAGCGGg -5'
9112 3' -68 NC_002512.2 + 1448 0.66 0.542452
Target:  5'- aCGCGcGUccGCUccuccccguUCCCGCCCcCGCCCc -3'
miRNA:   3'- gGCGC-CGccCGG---------AGGGCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 51200 0.66 0.542452
Target:  5'- gCCGCGcuGCGGGCCUCggaCG-UgUCGCaCCu -3'
miRNA:   3'- -GGCGC--CGCCCGGAGg--GCgGgAGCG-GG- -5'
9112 3' -68 NC_002512.2 + 92658 0.66 0.542452
Target:  5'- gCGCGGaucCGGGaCggCCGCCCgCGCCg -3'
miRNA:   3'- gGCGCC---GCCCgGagGGCGGGaGCGGg -5'
9112 3' -68 NC_002512.2 + 126364 0.66 0.542452
Target:  5'- aCGCGuucaCGGuCCUCuggCCGCCCgggagagCGCCCg -3'
miRNA:   3'- gGCGCc---GCCcGGAG---GGCGGGa------GCGGG- -5'
9112 3' -68 NC_002512.2 + 106304 0.66 0.542452
Target:  5'- aCGaCcGCGGGCCcgucgUCCaGCCCgUCGCUCu -3'
miRNA:   3'- gGC-GcCGCCCGG-----AGGgCGGG-AGCGGG- -5'
9112 3' -68 NC_002512.2 + 178241 0.66 0.542452
Target:  5'- uCCGgggaCGGCGcGGUCUCCgGgUCCgUCGCCa -3'
miRNA:   3'- -GGC----GCCGC-CCGGAGGgC-GGG-AGCGGg -5'
9112 3' -68 NC_002512.2 + 134044 0.66 0.542452
Target:  5'- aCGCcGCccccGGCCUCCUgcggGCCgUCGCCa -3'
miRNA:   3'- gGCGcCGc---CCGGAGGG----CGGgAGCGGg -5'
9112 3' -68 NC_002512.2 + 96293 0.66 0.542452
Target:  5'- gCUGCcGCGGGCCg-CCGCCgCgggcgggccggUCGCCg -3'
miRNA:   3'- -GGCGcCGCCCGGagGGCGG-G-----------AGCGGg -5'
9112 3' -68 NC_002512.2 + 101595 0.66 0.541569
Target:  5'- cCCGCGGuCGugcgggcGGCCgUCgGCCCggCGCCg -3'
miRNA:   3'- -GGCGCC-GC-------CCGGaGGgCGGGa-GCGGg -5'
9112 3' -68 NC_002512.2 + 9543 0.66 0.541569
Target:  5'- gCCaCGGCGuugacgaGGCCgUCCgGCCCcccggaGCCCg -3'
miRNA:   3'- -GGcGCCGC-------CCGG-AGGgCGGGag----CGGG- -5'
9112 3' -68 NC_002512.2 + 147565 0.66 0.541569
Target:  5'- gCCGgGGCGGcccgcggcCCUCUacacccagcgcuaCGCCCgUCGCCUc -3'
miRNA:   3'- -GGCgCCGCCc-------GGAGG-------------GCGGG-AGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.