Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9112 | 5' | -51.4 | NC_002512.2 | + | 149359 | 0.67 | 0.991526 |
Target: 5'- -aGGACGacggGGGAGAGGacgaggGCGCgGGGa -3' miRNA: 3'- caUCUGCa---UCUUCUCCaa----CGCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 187020 | 0.67 | 0.991526 |
Target: 5'- -cGGGCGUGGAGGAGGagGaCGaggaCCGGGc -3' miRNA: 3'- caUCUGCAUCUUCUCCaaC-GC----GGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 103465 | 0.67 | 0.991526 |
Target: 5'- -cGGGCGggaggAGGAGAGGcgGCGUCGa- -3' miRNA: 3'- caUCUGCa----UCUUCUCCaaCGCGGUcu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 18478 | 0.67 | 0.990327 |
Target: 5'- --cGACGUcguucuccucgaAGAAGcGGUUGCGCCu-- -3' miRNA: 3'- cauCUGCA------------UCUUCuCCAACGCGGucu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 228231 | 0.67 | 0.990327 |
Target: 5'- -gAGACGgcgGGAAGGGcGaacGUGCCGGAc -3' miRNA: 3'- caUCUGCa--UCUUCUC-Caa-CGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 121362 | 0.67 | 0.990327 |
Target: 5'- uUGGACGgcGGAGAGG----GCCGGAg -3' miRNA: 3'- cAUCUGCauCUUCUCCaacgCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 14319 | 0.68 | 0.988999 |
Target: 5'- uGUAGGCGUAGAcgacgccGAGG--GCGCCGa- -3' miRNA: 3'- -CAUCUGCAUCUu------CUCCaaCGCGGUcu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 67974 | 0.68 | 0.988999 |
Target: 5'- cGUGG-CGUccgccGGAGGAGGgccgGCGCgAGGa -3' miRNA: 3'- -CAUCuGCA-----UCUUCUCCaa--CGCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 191458 | 0.68 | 0.98843 |
Target: 5'- -gGGGCGUuGAGGuGGgccgaguacgagGCGCCGGAc -3' miRNA: 3'- caUCUGCAuCUUCuCCaa----------CGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 169345 | 0.68 | 0.987534 |
Target: 5'- -cGGACGUGGGAGGGGacuggcaugUGgGUgGGAg -3' miRNA: 3'- caUCUGCAUCUUCUCCa--------ACgCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 112511 | 0.68 | 0.987534 |
Target: 5'- aGUAGAUcgAGAAGGGcGUgcgGUGCCAGu -3' miRNA: 3'- -CAUCUGcaUCUUCUC-CAa--CGCGGUCu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 28086 | 0.68 | 0.987534 |
Target: 5'- -gAGACGgcGGAGAGGUcGcCGCCc-- -3' miRNA: 3'- caUCUGCauCUUCUCCAaC-GCGGucu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 44127 | 0.68 | 0.985922 |
Target: 5'- -aAGGCGUAGAcGAGGUcGaCGgaCCAGAg -3' miRNA: 3'- caUCUGCAUCUuCUCCAaC-GC--GGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 97822 | 0.68 | 0.982224 |
Target: 5'- -gGGACGcGGAguAGAGGgcgGCGCgGGGg -3' miRNA: 3'- caUCUGCaUCU--UCUCCaa-CGCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 22037 | 0.68 | 0.982224 |
Target: 5'- --uGGCGUccuuuAAGAGGaUGCGCCGGGa -3' miRNA: 3'- cauCUGCAuc---UUCUCCaACGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 20294 | 0.68 | 0.982224 |
Target: 5'- cGUGGACGUGGc---GGUgaccGUGCCGGAc -3' miRNA: 3'- -CAUCUGCAUCuucuCCAa---CGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 102438 | 0.68 | 0.982224 |
Target: 5'- uUAGAUGUGacGGAGAGGacGCGgCGGAg -3' miRNA: 3'- cAUCUGCAU--CUUCUCCaaCGCgGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 89424 | 0.68 | 0.982224 |
Target: 5'- aGgcGGCGUGacGGAGAGGUggcgcgagcUGUGUCGGAa -3' miRNA: 3'- -CauCUGCAU--CUUCUCCA---------ACGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 219693 | 0.69 | 0.980122 |
Target: 5'- -aGGACGaGGAGGAGcGUcgGCGCuCGGGg -3' miRNA: 3'- caUCUGCaUCUUCUC-CAa-CGCG-GUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 107079 | 0.69 | 0.97784 |
Target: 5'- cUGGACGUAGggGAcccgcCGCCAGGg -3' miRNA: 3'- cAUCUGCAUCuuCUccaacGCGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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