miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9116 3' -55.7 NC_002512.2 + 49479 0.66 0.97821
Target:  5'- aGGACGAcuucGAcuaCGCGAGGgagcGGUUCGuCCc -3'
miRNA:   3'- -CCUGCU----CUcg-GCGCUCC----UCAAGCuGG- -5'
9116 3' -55.7 NC_002512.2 + 145173 0.66 0.97821
Target:  5'- cGGAuccUGcAGuacuGCgCGCGcacGGAGUUCGACCc -3'
miRNA:   3'- -CCU---GC-UCu---CG-GCGCu--CCUCAAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 58911 0.66 0.97821
Target:  5'- cGACGGagauaaaauuGAGCCGCGAG----UCGAUCg -3'
miRNA:   3'- cCUGCU----------CUCGGCGCUCcucaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 10480 0.66 0.97821
Target:  5'- cGGGCGuGGGCguCGCGGcGGGc-CGACCa -3'
miRNA:   3'- -CCUGCuCUCG--GCGCUcCUCaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 132400 0.66 0.97821
Target:  5'- uGGACGAa---CGUGAuGGGGggaUCGACCg -3'
miRNA:   3'- -CCUGCUcucgGCGCU-CCUCa--AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 202210 0.66 0.97821
Target:  5'- cGACG-GAcCCGCGGgauacGGGGUUCGucuCCa -3'
miRNA:   3'- cCUGCuCUcGGCGCU-----CCUCAAGCu--GG- -5'
9116 3' -55.7 NC_002512.2 + 227230 0.66 0.97821
Target:  5'- cGGAcCGGGAGgCGCGGcGGAcGggCGGgCa -3'
miRNA:   3'- -CCU-GCUCUCgGCGCU-CCU-CaaGCUgG- -5'
9116 3' -55.7 NC_002512.2 + 130190 0.66 0.97821
Target:  5'- aGACGAGGGCC-CGucGcauGaUCGGCCa -3'
miRNA:   3'- cCUGCUCUCGGcGCucCu--CaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 38122 0.66 0.97821
Target:  5'- uGACGAggauGAGCaCGaCGAGGA---CGGCCa -3'
miRNA:   3'- cCUGCU----CUCG-GC-GCUCCUcaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 227344 0.66 0.97821
Target:  5'- gGGACgGAGAGaCGgGAcGGAGga-GGCCc -3'
miRNA:   3'- -CCUG-CUCUCgGCgCU-CCUCaagCUGG- -5'
9116 3' -55.7 NC_002512.2 + 167496 0.66 0.97821
Target:  5'- cGACGAG-GCCGUGuccGAGggCG-CCa -3'
miRNA:   3'- cCUGCUCuCGGCGCuc-CUCaaGCuGG- -5'
9116 3' -55.7 NC_002512.2 + 149143 0.66 0.97821
Target:  5'- gGGAccCGGGAccGCCGCGGGGccGGUgcCGcCCg -3'
miRNA:   3'- -CCU--GCUCU--CGGCGCUCC--UCAa-GCuGG- -5'
9116 3' -55.7 NC_002512.2 + 130251 0.66 0.97821
Target:  5'- cGGGCGccGGGCCcucCGAGGGcgaCGACCg -3'
miRNA:   3'- -CCUGCu-CUCGGc--GCUCCUcaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 189410 0.66 0.97821
Target:  5'- cGACcAGAuucuccGCCGCGAGGAaua-GACCu -3'
miRNA:   3'- cCUGcUCU------CGGCGCUCCUcaagCUGG- -5'
9116 3' -55.7 NC_002512.2 + 47813 0.66 0.97821
Target:  5'- aGACcccGGAGCCGCGGcuGAGgUCGGCg -3'
miRNA:   3'- cCUGc--UCUCGGCGCUc-CUCaAGCUGg -5'
9116 3' -55.7 NC_002512.2 + 94648 0.66 0.97821
Target:  5'- cGGACGAcGGCCuCGAGG----CGGCCc -3'
miRNA:   3'- -CCUGCUcUCGGcGCUCCucaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 67946 0.66 0.975907
Target:  5'- cGGACGgagaGGGGUCGCGccG-GUUCG-CCg -3'
miRNA:   3'- -CCUGC----UCUCGGCGCucCuCAAGCuGG- -5'
9116 3' -55.7 NC_002512.2 + 74561 0.66 0.975907
Target:  5'- cGACGGGAGCgagguugGCGAGaucGUccUCGGCCa -3'
miRNA:   3'- cCUGCUCUCGg------CGCUCcu-CA--AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 9481 0.66 0.975907
Target:  5'- cGGGCGGGc-CCGCGAGcggcGGGUagacgaCGGCCg -3'
miRNA:   3'- -CCUGCUCucGGCGCUC----CUCAa-----GCUGG- -5'
9116 3' -55.7 NC_002512.2 + 49608 0.66 0.975907
Target:  5'- cGACGGGAacGCCGCcgccauGAGGA--UCGuCCg -3'
miRNA:   3'- cCUGCUCU--CGGCG------CUCCUcaAGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.