miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9116 3' -55.7 NC_002512.2 + 109726 1.14 0.002891
Target:  5'- cGGACGAGAGCCGCGAGGAGUUCGACCu -3'
miRNA:   3'- -CCUGCUCUCGGCGCUCCUCAAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 11564 0.82 0.294383
Target:  5'- aGGACGAGGGCUaCGGGGAGcacgagCGGCCg -3'
miRNA:   3'- -CCUGCUCUCGGcGCUCCUCaa----GCUGG- -5'
9116 3' -55.7 NC_002512.2 + 200382 0.8 0.343015
Target:  5'- gGGGCGGGGGCUGC-AGGAucUCGGCCg -3'
miRNA:   3'- -CCUGCUCUCGGCGcUCCUcaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 129008 0.8 0.38115
Target:  5'- -cGCGcacuGGGGCCGgGAGGAGUUCGAaCCg -3'
miRNA:   3'- ccUGC----UCUCGGCgCUCCUCAAGCU-GG- -5'
9116 3' -55.7 NC_002512.2 + 149279 0.78 0.430496
Target:  5'- cGACGAgGAG-CGCGAGGAGggcgagaucgUCGACCg -3'
miRNA:   3'- cCUGCU-CUCgGCGCUCCUCa---------AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 227478 0.78 0.44254
Target:  5'- gGGGCGGccGGCCGCGAGGAGguaggagacgccgCGACCc -3'
miRNA:   3'- -CCUGCUc-UCGGCGCUCCUCaa-----------GCUGG- -5'
9116 3' -55.7 NC_002512.2 + 131033 0.78 0.456534
Target:  5'- aGGGCGucGGGGCCGCgGGGGAGgaCGGCg -3'
miRNA:   3'- -CCUGC--UCUCGGCG-CUCCUCaaGCUGg -5'
9116 3' -55.7 NC_002512.2 + 42572 0.78 0.4654
Target:  5'- cGGGCGGGcGCCGCGAGGcGagCGGCg -3'
miRNA:   3'- -CCUGCUCuCGGCGCUCCuCaaGCUGg -5'
9116 3' -55.7 NC_002512.2 + 4826 0.78 0.474355
Target:  5'- gGGACGuGuugcgcGCCGcCGAGGAGcgCGGCCa -3'
miRNA:   3'- -CCUGCuCu-----CGGC-GCUCCUCaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 11453 0.77 0.483395
Target:  5'- cGGACGGGGGCCGgGgaAGGGGcggaGACCg -3'
miRNA:   3'- -CCUGCUCUCGGCgC--UCCUCaag-CUGG- -5'
9116 3' -55.7 NC_002512.2 + 121370 0.77 0.492517
Target:  5'- cGGA-GAGGGCCGgaGAGGAGggCGACg -3'
miRNA:   3'- -CCUgCUCUCGGCg-CUCCUCaaGCUGg -5'
9116 3' -55.7 NC_002512.2 + 228079 0.77 0.49895
Target:  5'- aGACGAcGGGCUgcacacggucgggaGCGAGGAGggcgUCGGCCg -3'
miRNA:   3'- cCUGCU-CUCGG--------------CGCUCCUCa---AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 148490 0.77 0.501718
Target:  5'- aGGACGAGAagGCCGgggacggggaCGAGGAGg-CGGCCg -3'
miRNA:   3'- -CCUGCUCU--CGGC----------GCUCCUCaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 67986 0.77 0.520339
Target:  5'- cGGAgGAGGGCCggcGCGAGGAGagggagCGACg -3'
miRNA:   3'- -CCUgCUCUCGG---CGCUCCUCaa----GCUGg -5'
9116 3' -55.7 NC_002512.2 + 150328 0.77 0.528807
Target:  5'- cGGCGAGGacGCCGCGGcggugauGGAGUgCGACCu -3'
miRNA:   3'- cCUGCUCU--CGGCGCU-------CCUCAaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 101725 0.77 0.529751
Target:  5'- cGGACGAGAGCCuccgucucccucGCGAGGugg-UGGCCc -3'
miRNA:   3'- -CCUGCUCUCGG------------CGCUCCucaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 151572 0.76 0.539224
Target:  5'- --cCGAGAGCCgGCGAGGAGaUCGGUCa -3'
miRNA:   3'- ccuGCUCUCGG-CGCUCCUCaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 223918 0.76 0.577637
Target:  5'- cGGGCGAgaggucGAGCCGgaCGGGGAGgUCGAUCc -3'
miRNA:   3'- -CCUGCU------CUCGGC--GCUCCUCaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 95705 0.75 0.587343
Target:  5'- gGGACgGGGGGCCGgGAGGGGaagaCGGCUc -3'
miRNA:   3'- -CCUG-CUCUCGGCgCUCCUCaa--GCUGG- -5'
9116 3' -55.7 NC_002512.2 + 87296 0.75 0.597079
Target:  5'- uGGACG-GAGUC-CGAGGAGg-CGGCCa -3'
miRNA:   3'- -CCUGCuCUCGGcGCUCCUCaaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.