miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9116 3' -55.7 NC_002512.2 + 86 0.73 0.732726
Target:  5'- aGGCGAGAgGCgGCGGGGGGagaggaGGCCg -3'
miRNA:   3'- cCUGCUCU-CGgCGCUCCUCaag---CUGG- -5'
9116 3' -55.7 NC_002512.2 + 150 0.74 0.684963
Target:  5'- cGGGCGGGGcGCCgGCgGAGGAGcgCGcGCCg -3'
miRNA:   3'- -CCUGCUCU-CGG-CG-CUCCUCaaGC-UGG- -5'
9116 3' -55.7 NC_002512.2 + 4008 0.67 0.954611
Target:  5'- gGGGCGucgcaGGAGUCGCGucGGAGagaCGACa -3'
miRNA:   3'- -CCUGC-----UCUCGGCGCu-CCUCaa-GCUGg -5'
9116 3' -55.7 NC_002512.2 + 4212 0.74 0.684963
Target:  5'- cGGugGgAGcGGCCGCGGGGAGcgggacgUCGAgCCc -3'
miRNA:   3'- -CCugC-UC-UCGGCGCUCCUCa------AGCU-GG- -5'
9116 3' -55.7 NC_002512.2 + 4441 0.7 0.881218
Target:  5'- cGGCGGGGuGCCGgGcgcGGGGGUcggcgUCGGCCc -3'
miRNA:   3'- cCUGCUCU-CGGCgC---UCCUCA-----AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 4530 0.67 0.961671
Target:  5'- aGGAgGAGaAGCgGCGAcGGugaggcGGcgCGACCg -3'
miRNA:   3'- -CCUgCUC-UCGgCGCU-CC------UCaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 4826 0.78 0.474355
Target:  5'- gGGACGuGuugcgcGCCGcCGAGGAGcgCGGCCa -3'
miRNA:   3'- -CCUGCuCu-----CGGC-GCUCCUCaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 5318 0.67 0.946718
Target:  5'- --cCGGGuAGCCGCGGuGGGGaUCGAUg -3'
miRNA:   3'- ccuGCUC-UCGGCGCU-CCUCaAGCUGg -5'
9116 3' -55.7 NC_002512.2 + 5901 0.74 0.675258
Target:  5'- uGGACGgcGGGGCgCGCGGGGGauaCGGCCa -3'
miRNA:   3'- -CCUGC--UCUCG-GCGCUCCUcaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 6442 0.69 0.91229
Target:  5'- uGGCGGGcGCCGagacAGGGG-UCGGCCg -3'
miRNA:   3'- cCUGCUCuCGGCgc--UCCUCaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 6803 0.66 0.967932
Target:  5'- cGACGc-AGCCGCGGacccGGGUcUCGGCCa -3'
miRNA:   3'- cCUGCucUCGGCGCUc---CUCA-AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 7317 0.67 0.95077
Target:  5'- cGACGGcGGGCCGCGgcGGGAcggUCGggucGCCg -3'
miRNA:   3'- cCUGCU-CUCGGCGC--UCCUca-AGC----UGG- -5'
9116 3' -55.7 NC_002512.2 + 7368 0.67 0.946718
Target:  5'- cGACGGcGGCCGCGGcGGg---CGGCCa -3'
miRNA:   3'- cCUGCUcUCGGCGCU-CCucaaGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 7426 0.7 0.852702
Target:  5'- -cGCGAGGGCCggcGCGAGGuuGgccgCGGCCc -3'
miRNA:   3'- ccUGCUCUCGG---CGCUCCu-Caa--GCUGG- -5'
9116 3' -55.7 NC_002512.2 + 7700 0.67 0.95077
Target:  5'- cGGACGAcgccGGCCGCGgcccGGGAGUaggcgUCGGg- -3'
miRNA:   3'- -CCUGCUc---UCGGCGC----UCCUCA-----AGCUgg -5'
9116 3' -55.7 NC_002512.2 + 7751 0.73 0.723301
Target:  5'- gGGGCG-GAGCCGgGGcGGuagUCGGCCg -3'
miRNA:   3'- -CCUGCuCUCGGCgCU-CCucaAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 9481 0.66 0.975907
Target:  5'- cGGGCGGGc-CCGCGAGcggcGGGUagacgaCGGCCg -3'
miRNA:   3'- -CCUGCUCucGGCGCUC----CUCAa-----GCUGG- -5'
9116 3' -55.7 NC_002512.2 + 9980 0.66 0.97343
Target:  5'- cGACGAcGAGaCGaGAGGAGggcggUCGGCUc -3'
miRNA:   3'- cCUGCU-CUCgGCgCUCCUCa----AGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 10112 0.72 0.751329
Target:  5'- cGGcCGGGccGGCCGCGGGcaaauauGUUCGGCCu -3'
miRNA:   3'- -CCuGCUC--UCGGCGCUCcu-----CAAGCUGG- -5'
9116 3' -55.7 NC_002512.2 + 10446 0.67 0.946718
Target:  5'- gGGcACGGGGGCgCG-GAGGAGgcCGccGCCg -3'
miRNA:   3'- -CC-UGCUCUCG-GCgCUCCUCaaGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.