miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9116 5' -55.6 NC_002512.2 + 221175 0.66 0.963947
Target:  5'- cGCGGC-CGACCGACCuCGgAGUggaCGg -3'
miRNA:   3'- -UGUCGuGCUGGUUGG-GCgUCAag-GUg -5'
9116 5' -55.6 NC_002512.2 + 74412 0.66 0.963947
Target:  5'- gACGGUGcCGACgAACUCGCGGU-CgACg -3'
miRNA:   3'- -UGUCGU-GCUGgUUGGGCGUCAaGgUG- -5'
9116 5' -55.6 NC_002512.2 + 153435 0.66 0.963947
Target:  5'- aACGGCAgCGGCCGuuccgagaccugGCCCGgAGguugggUCUGCg -3'
miRNA:   3'- -UGUCGU-GCUGGU------------UGGGCgUCa-----AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 50698 0.66 0.963947
Target:  5'- --cGCugGACCGGCCCGaGGacCCGg -3'
miRNA:   3'- uguCGugCUGGUUGGGCgUCaaGGUg -5'
9116 5' -55.6 NC_002512.2 + 101938 0.66 0.963947
Target:  5'- gGCGGCGgGcaaguCCAagcuggugGCCCGCGGgcCCGCc -3'
miRNA:   3'- -UGUCGUgCu----GGU--------UGGGCGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 133677 0.66 0.963947
Target:  5'- cGCGGCcgccgUGGCCGACCuCGCGG--CCGCc -3'
miRNA:   3'- -UGUCGu----GCUGGUUGG-GCGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 136538 0.66 0.963947
Target:  5'- gACuGCACGcugGCCAugCUGCAGgaCCu- -3'
miRNA:   3'- -UGuCGUGC---UGGUugGGCGUCaaGGug -5'
9116 5' -55.6 NC_002512.2 + 74202 0.66 0.963947
Target:  5'- gGCGGCgACGuCCGuggGCUCGCGGUcCCGa -3'
miRNA:   3'- -UGUCG-UGCuGGU---UGGGCGUCAaGGUg -5'
9116 5' -55.6 NC_002512.2 + 133876 0.66 0.963618
Target:  5'- gGCGGCucgaggaGCGGCuCGGCCgGCGGUcCCGg -3'
miRNA:   3'- -UGUCG-------UGCUG-GUUGGgCGUCAaGGUg -5'
9116 5' -55.6 NC_002512.2 + 216495 0.66 0.963618
Target:  5'- cGCAGCGCGucagguaGCgGACgaaCCGCGGcaCCACg -3'
miRNA:   3'- -UGUCGUGC-------UGgUUG---GGCGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 180052 0.66 0.963618
Target:  5'- gGCGGUGCGgguGCCGGacgacccccugucUCCGCAGUuucucgUCCGCg -3'
miRNA:   3'- -UGUCGUGC---UGGUU-------------GGGCGUCA------AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 174668 0.66 0.960912
Target:  5'- uGCcGCACGAUCAGCCgguaccggccguucaGCAGguuggCCGCg -3'
miRNA:   3'- -UGuCGUGCUGGUUGGg--------------CGUCaa---GGUG- -5'
9116 5' -55.6 NC_002512.2 + 35330 0.66 0.960564
Target:  5'- -gGGCACGGCCuuCCCGgGGcggUUACg -3'
miRNA:   3'- ugUCGUGCUGGuuGGGCgUCaa-GGUG- -5'
9116 5' -55.6 NC_002512.2 + 175705 0.66 0.960564
Target:  5'- uACAGCugGAuCCGgauCCCGCguccGGUcaugauccUCCGCu -3'
miRNA:   3'- -UGUCGugCU-GGUu--GGGCG----UCA--------AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 142500 0.66 0.960564
Target:  5'- cCAGCACccuccuCCAcucGCCCGUGGacUCCACg -3'
miRNA:   3'- uGUCGUGcu----GGU---UGGGCGUCa-AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 43242 0.66 0.960564
Target:  5'- -gAGCugGGCCcaguGGCCCGCGGgca-GCg -3'
miRNA:   3'- ugUCGugCUGG----UUGGGCGUCaaggUG- -5'
9116 5' -55.6 NC_002512.2 + 26732 0.66 0.960564
Target:  5'- --uGCGCGucGCCGGCgCCGCuGUacgCCACg -3'
miRNA:   3'- uguCGUGC--UGGUUG-GGCGuCAa--GGUG- -5'
9116 5' -55.6 NC_002512.2 + 76542 0.66 0.960564
Target:  5'- aGCGGgACccgccgacccgGACCGGCCCaGCGGaaCCACc -3'
miRNA:   3'- -UGUCgUG-----------CUGGUUGGG-CGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 20002 0.66 0.960564
Target:  5'- uGCucccCGCGACCGACCaCGUAGUagCCGg -3'
miRNA:   3'- -UGuc--GUGCUGGUUGG-GCGUCAa-GGUg -5'
9116 5' -55.6 NC_002512.2 + 176113 0.66 0.960564
Target:  5'- uGCAGCugGGCCucgaagucuAAUCCGUAucucGaUCCGCg -3'
miRNA:   3'- -UGUCGugCUGG---------UUGGGCGU----CaAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.