miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9116 5' -55.6 NC_002512.2 + 282 0.67 0.925542
Target:  5'- aGCGGCGCGACgGgggGCCaggGCAGc-CCACg -3'
miRNA:   3'- -UGUCGUGCUGgU---UGGg--CGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 1817 0.66 0.956969
Target:  5'- uGCAGCcCGucgucuCCcGCgCCGCAGccgUCCGCg -3'
miRNA:   3'- -UGUCGuGCu-----GGuUG-GGCGUCa--AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 2446 0.69 0.837985
Target:  5'- gGCAGCGCGAaggugaCCGcgGCCCGCGc--CCGCg -3'
miRNA:   3'- -UGUCGUGCU------GGU--UGGGCGUcaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 3375 0.69 0.85375
Target:  5'- gGCGGCAgGGCC-GCCaGCAGgacCCGCg -3'
miRNA:   3'- -UGUCGUgCUGGuUGGgCGUCaa-GGUG- -5'
9116 5' -55.6 NC_002512.2 + 4553 0.73 0.681172
Target:  5'- gGCGGCGCGACCGACggCUGCGGcgUCUgggGCg -3'
miRNA:   3'- -UGUCGUGCUGGUUG--GGCGUCa-AGG---UG- -5'
9116 5' -55.6 NC_002512.2 + 4849 0.68 0.908629
Target:  5'- -gAGCGCGGCCA--UCGCGGgguucgCCGCg -3'
miRNA:   3'- ugUCGUGCUGGUugGGCGUCaa----GGUG- -5'
9116 5' -55.6 NC_002512.2 + 5164 0.73 0.630997
Target:  5'- aGCGGCGCGACCGgggcggcggccgGCCCcagcagggcggGCAGgaCCGCg -3'
miRNA:   3'- -UGUCGUGCUGGU------------UGGG-----------CGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 5265 0.67 0.930718
Target:  5'- cGCGGCgGCGACCccgAGCCCGguCGGcaCCGCg -3'
miRNA:   3'- -UGUCG-UGCUGG---UUGGGC--GUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 7467 0.69 0.875927
Target:  5'- cGCGGCGCGgcuGCCGGCCCccgccgaagccGCGGcgcUCCAUg -3'
miRNA:   3'- -UGUCGUGC---UGGUUGGG-----------CGUCa--AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 8431 0.68 0.90803
Target:  5'- cGCGGCcggucggACGACCGcgccccGgCCGCGG-UCCGCa -3'
miRNA:   3'- -UGUCG-------UGCUGGU------UgGGCGUCaAGGUG- -5'
9116 5' -55.6 NC_002512.2 + 8539 0.69 0.868738
Target:  5'- cACGGaGCGGCgAGgCCGCGGUcucggaUCCACg -3'
miRNA:   3'- -UGUCgUGCUGgUUgGGCGUCA------AGGUG- -5'
9116 5' -55.6 NC_002512.2 + 9068 0.72 0.720655
Target:  5'- -gAGCACGGCCAG-CgGCGGgaCCACg -3'
miRNA:   3'- ugUCGUGCUGGUUgGgCGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 9495 0.68 0.896212
Target:  5'- aGCGGCggguagacgACGGCCGGCCCcagcacggcgGCGGcggCCACg -3'
miRNA:   3'- -UGUCG---------UGCUGGUUGGG----------CGUCaa-GGUG- -5'
9116 5' -55.6 NC_002512.2 + 10980 0.7 0.812999
Target:  5'- aGCGGCACGAgCCGcCCCGC-GUggCGCg -3'
miRNA:   3'- -UGUCGUGCU-GGUuGGGCGuCAagGUG- -5'
9116 5' -55.6 NC_002512.2 + 11667 0.66 0.944863
Target:  5'- gACGGUaauuacACGACCuguAUCCuacGCAGUUCUGCg -3'
miRNA:   3'- -UGUCG------UGCUGGu--UGGG---CGUCAAGGUG- -5'
9116 5' -55.6 NC_002512.2 + 11791 0.67 0.940377
Target:  5'- -gGGCGCGAC--GCCCGCuuccCCACg -3'
miRNA:   3'- ugUCGUGCUGguUGGGCGucaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 12089 0.67 0.914497
Target:  5'- gACGGCgACG-CCGAUCCGcCAGccggCCGCg -3'
miRNA:   3'- -UGUCG-UGCuGGUUGGGC-GUCaa--GGUG- -5'
9116 5' -55.6 NC_002512.2 + 12262 0.72 0.730365
Target:  5'- uCAGCACGA--GACCCGUGGcgCCGCc -3'
miRNA:   3'- uGUCGUGCUggUUGGGCGUCaaGGUG- -5'
9116 5' -55.6 NC_002512.2 + 12910 0.68 0.908629
Target:  5'- cGCAGCACauggaGugC-GCCCGgGcGUUCCGCg -3'
miRNA:   3'- -UGUCGUG-----CugGuUGGGCgU-CAAGGUG- -5'
9116 5' -55.6 NC_002512.2 + 13068 0.68 0.902533
Target:  5'- cGCAGC-CGuacCCGACCCGCGacgCCAUc -3'
miRNA:   3'- -UGUCGuGCu--GGUUGGGCGUcaaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.