miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 142190 0.71 0.854511
Target:  5'- aGAAGGAuCCGGGGucgUGUCGGcGCGcCg -3'
miRNA:   3'- gCUUCCU-GGCCCCua-GCAGCU-UGCuG- -5'
9117 5' -55 NC_002512.2 + 22336 0.7 0.869164
Target:  5'- gCGAGGGACgCGaGGGAggaGUCGcAGCGGg -3'
miRNA:   3'- -GCUUCCUG-GC-CCCUag-CAGC-UUGCUg -5'
9117 5' -55 NC_002512.2 + 111232 0.7 0.869164
Target:  5'- aCGGGcGGCCGGgcgcccGGAgCGUCGGGCGGCa -3'
miRNA:   3'- -GCUUcCUGGCC------CCUaGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 148496 0.7 0.869164
Target:  5'- aGAAGG-CCGGGGA-CGg-GGACGAg -3'
miRNA:   3'- gCUUCCuGGCCCCUaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 131605 0.7 0.869164
Target:  5'- aGGAGGACgaCGGGGA----CGAGCGGCg -3'
miRNA:   3'- gCUUCCUG--GCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 81844 0.7 0.869164
Target:  5'- cCGGAccGGGUCGGGGAgCGUCGGcgggaaGCGACa -3'
miRNA:   3'- -GCUU--CCUGGCCCCUaGCAGCU------UGCUG- -5'
9117 5' -55 NC_002512.2 + 226738 0.7 0.876197
Target:  5'- aCGAcggcGGGACCGGGcucCGgcCGGACGACg -3'
miRNA:   3'- -GCU----UCCUGGCCCcuaGCa-GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 118295 0.7 0.876197
Target:  5'- cCGGAGGAagauCCGGGccGAgcgCG-CGGACGACg -3'
miRNA:   3'- -GCUUCCU----GGCCC--CUa--GCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 157160 0.7 0.876197
Target:  5'- gCGgcGGGCCGGGcGG-CGU-GGGCGGCg -3'
miRNA:   3'- -GCuuCCUGGCCC-CUaGCAgCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 227360 0.7 0.876197
Target:  5'- aCGGAGGAggcCCGGGGccgccggCGUCGGGgGAg -3'
miRNA:   3'- -GCUUCCU---GGCCCCua-----GCAGCUUgCUg -5'
9117 5' -55 NC_002512.2 + 124789 0.7 0.876197
Target:  5'- --cGGGAcCCGGGGAgacaCGUCGAccCGACc -3'
miRNA:   3'- gcuUCCU-GGCCCCUa---GCAGCUu-GCUG- -5'
9117 5' -55 NC_002512.2 + 124570 0.7 0.876197
Target:  5'- gGAGGaGGCCcGGGA-CGUCaaGAGCGACg -3'
miRNA:   3'- gCUUC-CUGGcCCCUaGCAG--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 104630 0.7 0.883027
Target:  5'- aCGggGGAgaGGGGGagggCGgcgCGAACGAg -3'
miRNA:   3'- -GCuuCCUggCCCCUa---GCa--GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 90497 0.7 0.883027
Target:  5'- uCGAcGGGAUCGGGGccgaggccggCGgCGGACGACg -3'
miRNA:   3'- -GCU-UCCUGGCCCCua--------GCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 205217 0.7 0.883027
Target:  5'- cCGAGcGGcCCGGGacggaGAUCGggaCGGACGACg -3'
miRNA:   3'- -GCUU-CCuGGCCC-----CUAGCa--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 156465 0.7 0.883027
Target:  5'- gCGggGGACuCGGGGG-CGgCGGGCucGGCg -3'
miRNA:   3'- -GCuuCCUG-GCCCCUaGCaGCUUG--CUG- -5'
9117 5' -55 NC_002512.2 + 91981 0.7 0.883027
Target:  5'- cCGGAGGGCCGcguccGGGucucccgCGUCGccGGCGGCg -3'
miRNA:   3'- -GCUUCCUGGC-----CCCua-----GCAGC--UUGCUG- -5'
9117 5' -55 NC_002512.2 + 103388 0.7 0.883027
Target:  5'- -aGAGGcucgcgcccaacGCCGGGGAUC--CGGGCGACg -3'
miRNA:   3'- gcUUCC------------UGGCCCCUAGcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 130128 0.7 0.887686
Target:  5'- uGGAGGcCCGGGGuggUGUCGcggccgcggggcccGGCGGCg -3'
miRNA:   3'- gCUUCCuGGCCCCua-GCAGC--------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 106383 0.7 0.896065
Target:  5'- gGAAGGACCGGGGGc---CGAGCa-- -3'
miRNA:   3'- gCUUCCUGGCCCCUagcaGCUUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.