miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 223728 0.7 0.900427
Target:  5'- gGGAGGAcgaCCGGGaGAcCGUCGuggaggucguguccGACGACa -3'
miRNA:   3'- gCUUCCU---GGCCC-CUaGCAGC--------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 166218 0.69 0.908248
Target:  5'- aGGAGGGCCgcgcgcgcguGGGGAaguacugCGUCcaGGACGGCg -3'
miRNA:   3'- gCUUCCUGG----------CCCCUa------GCAG--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 214 0.69 0.908248
Target:  5'- aGAGGGAgCGGGGAcCGaaGGGCaGGCg -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCagCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 158790 0.69 0.908248
Target:  5'- uGguGGcCCGGGGcGUCGUCGAcuucuCGGCc -3'
miRNA:   3'- gCuuCCuGGCCCC-UAGCAGCUu----GCUG- -5'
9117 5' -55 NC_002512.2 + 229617 0.69 0.908248
Target:  5'- aGAGGGAgCGGGGAcCGaaGGGCaGGCg -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCagCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 193570 0.69 0.908248
Target:  5'- gGGAGGGgUGGGGAUC-UCauccuccgcggGGACGACa -3'
miRNA:   3'- gCUUCCUgGCCCCUAGcAG-----------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 44056 0.69 0.908248
Target:  5'- aGAAGaACUGGGGGaCGUUG-ACGGCg -3'
miRNA:   3'- gCUUCcUGGCCCCUaGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 28228 0.69 0.913446
Target:  5'- aGAAGGaaccgcgGCCGGGGccGUCGcgccgCGAguACGACg -3'
miRNA:   3'- gCUUCC-------UGGCCCC--UAGCa----GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 70704 0.69 0.914012
Target:  5'- gCGggGGACgGGGGGaCGgggGGACGGg -3'
miRNA:   3'- -GCuuCCUGgCCCCUaGCag-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 77530 0.69 0.914012
Target:  5'- uCGAucGGGACCGGaGAcgccuacgUCG-CGGACGGCg -3'
miRNA:   3'- -GCU--UCCUGGCCcCU--------AGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 103918 0.69 0.914012
Target:  5'- aGGucGGGaACCGaGGGuguGUCGUCGAGgGGCg -3'
miRNA:   3'- gCU--UCC-UGGC-CCC---UAGCAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 227226 0.69 0.919557
Target:  5'- gCGgcGGACCGGGaGGcgCGgCGGACGGg -3'
miRNA:   3'- -GCuuCCUGGCCC-CUa-GCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 193939 0.69 0.919557
Target:  5'- uGAcGG-CCGGGGAaCGUCGucUGGCg -3'
miRNA:   3'- gCUuCCuGGCCCCUaGCAGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 147056 0.69 0.919557
Target:  5'- ---cGGACCGGGGcgggaaCGUgUGGGCGACg -3'
miRNA:   3'- gcuuCCUGGCCCCua----GCA-GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 198681 0.69 0.919557
Target:  5'- aCGggGGGCCcgaagucgGGGGGUUcuUCGGACGuCg -3'
miRNA:   3'- -GCuuCCUGG--------CCCCUAGc-AGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 219840 0.69 0.919557
Target:  5'- uCGggGGGuCCGGcccgggggcGGAUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCU-GGCC---------CCUAGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 113278 0.69 0.919557
Target:  5'- aGggGGGCCacaggcGGGGGUCGUgcaGGGCG-Cu -3'
miRNA:   3'- gCuuCCUGG------CCCCUAGCAg--CUUGCuG- -5'
9117 5' -55 NC_002512.2 + 128053 0.69 0.919557
Target:  5'- uGgcGGAgauCCGGaGGAUCGUC--GCGGCg -3'
miRNA:   3'- gCuuCCU---GGCC-CCUAGCAGcuUGCUG- -5'
9117 5' -55 NC_002512.2 + 211889 0.69 0.924358
Target:  5'- gGAgcGGGucaccuuCCGGGGcugccgcGUCGUCGAGCGuCg -3'
miRNA:   3'- gCU--UCCu------GGCCCC-------UAGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 24707 0.69 0.92488
Target:  5'- -cGAGGACgCGGGcGAgggagacgcggCGUCGAgaGCGACg -3'
miRNA:   3'- gcUUCCUG-GCCC-CUa----------GCAGCU--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.