miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 156029 0.67 0.9626
Target:  5'- aCGuccuGGGGCCaGugcaugcGGGUCGUCGAcACGGCg -3'
miRNA:   3'- -GCu---UCCUGGcC-------CCUAGCAGCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 120628 0.67 0.961937
Target:  5'- gGGAGGcggcgggacgggacGCCGGGGG-CG-CGGACGGa -3'
miRNA:   3'- gCUUCC--------------UGGCCCCUaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 5867 0.67 0.960927
Target:  5'- uCGGAGucCCGGGcGUCGUCcgacucgucgcucguGGACGGCg -3'
miRNA:   3'- -GCUUCcuGGCCCcUAGCAG---------------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 140992 0.67 0.959553
Target:  5'- uCGggGGGCaCGGGGGggagcgCGgggaGGACGGg -3'
miRNA:   3'- -GCuuCCUG-GCCCCUa-----GCag--CUUGCUg -5'
9117 5' -55 NC_002512.2 + 80707 0.67 0.959553
Target:  5'- cCGggGGGCgaGGGcGcgCGggcccgCGGGCGGCa -3'
miRNA:   3'- -GCuuCCUGg-CCC-CuaGCa-----GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 15556 0.67 0.959553
Target:  5'- uGAGGaGGCCGGa-GUCGUCGGccugcucguGCGGCa -3'
miRNA:   3'- gCUUC-CUGGCCccUAGCAGCU---------UGCUG- -5'
9117 5' -55 NC_002512.2 + 195221 0.67 0.959553
Target:  5'- uGAGGGacgGCCGGaGGUUGacuUUGAACGACg -3'
miRNA:   3'- gCUUCC---UGGCCcCUAGC---AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 103045 0.67 0.959553
Target:  5'- aGAA-GACCGGGGGcaggagcgCGggGAACGGCa -3'
miRNA:   3'- gCUUcCUGGCCCCUa-------GCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 128727 0.68 0.955972
Target:  5'- uGGAGG-CUGGGaGA-CGgCGGACGGCg -3'
miRNA:   3'- gCUUCCuGGCCC-CUaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 224087 0.68 0.955972
Target:  5'- aCGGAGGACCucagGGGGAccgUGUCGGucguggUGACc -3'
miRNA:   3'- -GCUUCCUGG----CCCCUa--GCAGCUu-----GCUG- -5'
9117 5' -55 NC_002512.2 + 133851 0.68 0.955602
Target:  5'- cCGGAGGACaccgaggacguccUGGGGcggcUCGagGAGCGGCu -3'
miRNA:   3'- -GCUUCCUG-------------GCCCCu---AGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226688 0.68 0.952181
Target:  5'- gCGccGGGCCGucgcccgcGGcGG-CGUCGAGCGACg -3'
miRNA:   3'- -GCuuCCUGGC--------CC-CUaGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 221294 0.68 0.952181
Target:  5'- gGggGaGGCCGGGGucggCGggGAGCGGg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 63554 0.68 0.952181
Target:  5'- uCGAAGauGACCcuccggagGGGGAUCcuggccagGUUGGGCGACg -3'
miRNA:   3'- -GCUUC--CUGG--------CCCCUAG--------CAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 118135 0.68 0.952181
Target:  5'- gGAGGGGgCGGGGG-CGgaaccgCGAcaugGCGACc -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCa-----GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 134286 0.68 0.952181
Target:  5'- gCGggGucCCGGaGGAUCGUCuucGAgGACg -3'
miRNA:   3'- -GCuuCcuGGCC-CCUAGCAGc--UUgCUG- -5'
9117 5' -55 NC_002512.2 + 96750 0.68 0.948177
Target:  5'- aCGAGcGAgCGGGGcccCGUCcGAGCGGCg -3'
miRNA:   3'- -GCUUcCUgGCCCCua-GCAG-CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 123557 0.68 0.948177
Target:  5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3'
miRNA:   3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 100277 0.68 0.948177
Target:  5'- aCGGAGcucggcGAgCGGGGcgaguUCGUCGGggGCGACg -3'
miRNA:   3'- -GCUUC------CUgGCCCCu----AGCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 4216 0.68 0.948177
Target:  5'- gGGAGcGGCCgcGGGGAgcgggaCGUCGAGCcccGACg -3'
miRNA:   3'- gCUUC-CUGG--CCCCUa-----GCAGCUUG---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.