miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 97000 0.65 0.984911
Target:  5'- -----cGCCGGGGAcgccgUCGUCGAuuuccuccgcggACGGCa -3'
miRNA:   3'- gcuuccUGGCCCCU-----AGCAGCU------------UGCUG- -5'
9117 5' -55 NC_002512.2 + 97211 0.67 0.96908
Target:  5'- gCGgcGGGCCGGGcGGgaCGUCGA--GGCg -3'
miRNA:   3'- -GCuuCCUGGCCC-CUa-GCAGCUugCUG- -5'
9117 5' -55 NC_002512.2 + 98319 0.68 0.947765
Target:  5'- cCGAggggcucGGGGCCGGGGA-CGgggagggGGGCGGCc -3'
miRNA:   3'- -GCU-------UCCUGGCCCCUaGCag-----CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 99909 0.74 0.705417
Target:  5'- uCGAGGGcGCCGGGGGccCGcCGAAgGGCg -3'
miRNA:   3'- -GCUUCC-UGGCCCCUa-GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 99980 0.73 0.771091
Target:  5'- cCGAGGaGACgGGagagcGGAUCGUCGGcgaggGCGACg -3'
miRNA:   3'- -GCUUC-CUGgCC-----CCUAGCAGCU-----UGCUG- -5'
9117 5' -55 NC_002512.2 + 100277 0.68 0.948177
Target:  5'- aCGGAGcucggcGAgCGGGGcgaguUCGUCGGggGCGACg -3'
miRNA:   3'- -GCUUC------CUgGCCCCu----AGCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 100490 0.66 0.974467
Target:  5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3'
miRNA:   3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 103045 0.67 0.959553
Target:  5'- aGAA-GACCGGGGGcaggagcgCGggGAACGGCa -3'
miRNA:   3'- gCUUcCUGGCCCCUa-------GCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 103388 0.7 0.883027
Target:  5'- -aGAGGcucgcgcccaacGCCGGGGAUC--CGGGCGACg -3'
miRNA:   3'- gcUUCC------------UGGCCCCUAGcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 103918 0.69 0.914012
Target:  5'- aGGucGGGaACCGaGGGuguGUCGUCGAGgGGCg -3'
miRNA:   3'- gCU--UCC-UGGC-CCC---UAGCAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 104630 0.7 0.883027
Target:  5'- aCGggGGAgaGGGGGagggCGgcgCGAACGAg -3'
miRNA:   3'- -GCuuCCUggCCCCUa---GCa--GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 106383 0.7 0.896065
Target:  5'- gGAAGGACCGGGGGc---CGAGCa-- -3'
miRNA:   3'- gCUUCCUGGCCCCUagcaGCUUGcug -5'
9117 5' -55 NC_002512.2 + 108373 0.68 0.939519
Target:  5'- uGggGGAUCGGGaGggCGggGGGCGAg -3'
miRNA:   3'- gCuuCCUGGCCC-CuaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 108414 0.65 0.984911
Target:  5'- gGGAGGA-CGGGGA-CGgcggCGGGCG-Cg -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCa---GCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 108441 0.71 0.839111
Target:  5'- -cGGGGGCCGGGGGgucccUCccCGGGCGGCg -3'
miRNA:   3'- gcUUCCUGGCCCCU-----AGcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 108589 0.66 0.981219
Target:  5'- uCGggGGGCCccGGGGAgCGgCGGccGCGGg -3'
miRNA:   3'- -GCuuCCUGG--CCCCUaGCaGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 108875 1.09 0.006543
Target:  5'- aCGAAGGACCGGGGAUCGUCGAACGACc -3'
miRNA:   3'- -GCUUCCUGGCCCCUAGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 109038 0.78 0.464928
Target:  5'- -cGAGGACCGGGGGggcUCGggGGACGACc -3'
miRNA:   3'- gcUUCCUGGCCCCU---AGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 111232 0.7 0.869164
Target:  5'- aCGGGcGGCCGGgcgcccGGAgCGUCGGGCGGCa -3'
miRNA:   3'- -GCUUcCUGGCC------CCUaGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 113278 0.69 0.919557
Target:  5'- aGggGGGCCacaggcGGGGGUCGUgcaGGGCG-Cu -3'
miRNA:   3'- gCuuCCUGG------CCCCUAGCAg--CUUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.