miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 124789 0.7 0.876197
Target:  5'- --cGGGAcCCGGGGAgacaCGUCGAccCGACc -3'
miRNA:   3'- gcuUCCU-GGCCCCUa---GCAGCUu-GCUG- -5'
9117 5' -55 NC_002512.2 + 128829 0.68 0.939519
Target:  5'- uCGAcgccGGGuucGCCGGGGAgg--UGAACGACa -3'
miRNA:   3'- -GCU----UCC---UGGCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 75022 0.68 0.934861
Target:  5'- cCGAucgAGGGCCGGGGA-CGaggGGACGcACg -3'
miRNA:   3'- -GCU---UCCUGGCCCCUaGCag-CUUGC-UG- -5'
9117 5' -55 NC_002512.2 + 74918 0.68 0.934861
Target:  5'- gCGGAGGcCCGGaggcGGAUCG-CGGACcGCg -3'
miRNA:   3'- -GCUUCCuGGCC----CCUAGCaGCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 29752 0.68 0.934861
Target:  5'- gCGAGGGGgcCCGGcGAUCGaCGcGACGGCg -3'
miRNA:   3'- -GCUUCCU--GGCCcCUAGCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 11567 0.69 0.929981
Target:  5'- aCGAGGGcuaCGGGGAgca-CGAGCGGCc -3'
miRNA:   3'- -GCUUCCug-GCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 24707 0.69 0.92488
Target:  5'- -cGAGGACgCGGGcGAgggagacgcggCGUCGAgaGCGACg -3'
miRNA:   3'- gcUUCCUG-GCCC-CUa----------GCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 125152 0.69 0.92488
Target:  5'- gCGggGGccCCGGGGG-CGggCGGACGGu -3'
miRNA:   3'- -GCuuCCu-GGCCCCUaGCa-GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 53866 0.69 0.92488
Target:  5'- aGggGGACCGuccguuccccaGGGAcCGaCGGACGAg -3'
miRNA:   3'- gCuuCCUGGC-----------CCCUaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 128053 0.69 0.919557
Target:  5'- uGgcGGAgauCCGGaGGAUCGUC--GCGGCg -3'
miRNA:   3'- gCuuCCU---GGCC-CCUAGCAGcuUGCUG- -5'
9117 5' -55 NC_002512.2 + 113278 0.69 0.919557
Target:  5'- aGggGGGCCacaggcGGGGGUCGUgcaGGGCG-Cu -3'
miRNA:   3'- gCuuCCUGG------CCCCUAGCAg--CUUGCuG- -5'
9117 5' -55 NC_002512.2 + 103918 0.69 0.914012
Target:  5'- aGGucGGGaACCGaGGGuguGUCGUCGAGgGGCg -3'
miRNA:   3'- gCU--UCC-UGGC-CCC---UAGCAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 70704 0.69 0.914012
Target:  5'- gCGggGGACgGGGGGaCGgggGGACGGg -3'
miRNA:   3'- -GCuuCCUGgCCCCUaGCag-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 28228 0.69 0.913446
Target:  5'- aGAAGGaaccgcgGCCGGGGccGUCGcgccgCGAguACGACg -3'
miRNA:   3'- gCUUCC-------UGGCCCC--UAGCa----GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 44056 0.69 0.908248
Target:  5'- aGAAGaACUGGGGGaCGUUG-ACGGCg -3'
miRNA:   3'- gCUUCcUGGCCCCUaGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 130128 0.7 0.887686
Target:  5'- uGGAGGcCCGGGGuggUGUCGcggccgcggggcccGGCGGCg -3'
miRNA:   3'- gCUUCCuGGCCCCua-GCAGC--------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 103388 0.7 0.883027
Target:  5'- -aGAGGcucgcgcccaacGCCGGGGAUC--CGGGCGACg -3'
miRNA:   3'- gcUUCC------------UGGCCCCUAGcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 91981 0.7 0.883027
Target:  5'- cCGGAGGGCCGcguccGGGucucccgCGUCGccGGCGGCg -3'
miRNA:   3'- -GCUUCCUGGC-----CCCua-----GCAGC--UUGCUG- -5'
9117 5' -55 NC_002512.2 + 118295 0.7 0.876197
Target:  5'- cCGGAGGAagauCCGGGccGAgcgCG-CGGACGACg -3'
miRNA:   3'- -GCUUCCU----GGCCC--CUa--GCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 124570 0.7 0.876197
Target:  5'- gGAGGaGGCCcGGGA-CGUCaaGAGCGACg -3'
miRNA:   3'- gCUUC-CUGGcCCCUaGCAG--CUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.