miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 29752 0.68 0.934861
Target:  5'- gCGAGGGGgcCCGGcGAUCGaCGcGACGGCg -3'
miRNA:   3'- -GCUUCCU--GGCCcCUAGCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 74918 0.68 0.934861
Target:  5'- gCGGAGGcCCGGaggcGGAUCG-CGGACcGCg -3'
miRNA:   3'- -GCUUCCuGGCC----CCUAGCaGCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 75022 0.68 0.934861
Target:  5'- cCGAucgAGGGCCGGGGA-CGaggGGACGcACg -3'
miRNA:   3'- -GCU---UCCUGGCCCCUaGCag-CUUGC-UG- -5'
9117 5' -55 NC_002512.2 + 122012 0.68 0.936281
Target:  5'- gGAGGGGCCGGaggcggcGGAUCGgCGcucgcgcacgcccggGGCGGCg -3'
miRNA:   3'- gCUUCCUGGCC-------CCUAGCaGC---------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 128829 0.68 0.939519
Target:  5'- uCGAcgccGGGuucGCCGGGGAgg--UGAACGACa -3'
miRNA:   3'- -GCU----UCC---UGGCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 108373 0.68 0.939519
Target:  5'- uGggGGAUCGGGaGggCGggGGGCGAg -3'
miRNA:   3'- gCuuCCUGGCCC-CuaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 87258 0.68 0.943957
Target:  5'- gCGAGGGGucuCCGGGGAgcgaacacgcggUCGUgGgGugGACg -3'
miRNA:   3'- -GCUUCCU---GGCCCCU------------AGCAgC-UugCUG- -5'
9117 5' -55 NC_002512.2 + 88448 0.68 0.943957
Target:  5'- aCGucGGACCgagcGGGGGcUCGUaCGAACaGACc -3'
miRNA:   3'- -GCuuCCUGG----CCCCU-AGCA-GCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 45197 0.68 0.943957
Target:  5'- uCGAccGGGACCGGcGG--CG-CGGACGGCc -3'
miRNA:   3'- -GCU--UCCUGGCC-CCuaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 80850 0.68 0.943957
Target:  5'- gCGAgccucGGGACgCGGGGcucggUGUCGGGCGGu -3'
miRNA:   3'- -GCU-----UCCUG-GCCCCua---GCAGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 98319 0.68 0.947765
Target:  5'- cCGAggggcucGGGGCCGGGGA-CGgggagggGGGCGGCc -3'
miRNA:   3'- -GCU-------UCCUGGCCCCUaGCag-----CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 100277 0.68 0.948177
Target:  5'- aCGGAGcucggcGAgCGGGGcgaguUCGUCGGggGCGACg -3'
miRNA:   3'- -GCUUC------CUgGCCCCu----AGCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 4216 0.68 0.948177
Target:  5'- gGGAGcGGCCgcGGGGAgcgggaCGUCGAGCcccGACg -3'
miRNA:   3'- gCUUC-CUGG--CCCCUa-----GCAGCUUG---CUG- -5'
9117 5' -55 NC_002512.2 + 63554 0.68 0.952181
Target:  5'- uCGAAGauGACCcuccggagGGGGAUCcuggccagGUUGGGCGACg -3'
miRNA:   3'- -GCUUC--CUGG--------CCCCUAG--------CAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 118135 0.68 0.952181
Target:  5'- gGAGGGGgCGGGGG-CGgaaccgCGAcaugGCGACc -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCa-----GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 134286 0.68 0.952181
Target:  5'- gCGggGucCCGGaGGAUCGUCuucGAgGACg -3'
miRNA:   3'- -GCuuCcuGGCC-CCUAGCAGc--UUgCUG- -5'
9117 5' -55 NC_002512.2 + 133851 0.68 0.955602
Target:  5'- cCGGAGGACaccgaggacguccUGGGGcggcUCGagGAGCGGCu -3'
miRNA:   3'- -GCUUCCUG-------------GCCCCu---AGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 128727 0.68 0.955972
Target:  5'- uGGAGG-CUGGGaGA-CGgCGGACGGCg -3'
miRNA:   3'- gCUUCCuGGCCC-CUaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 103918 0.69 0.914012
Target:  5'- aGGucGGGaACCGaGGGuguGUCGUCGAGgGGCg -3'
miRNA:   3'- gCU--UCC-UGGC-CCC---UAGCAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 113278 0.69 0.919557
Target:  5'- aGggGGGCCacaggcGGGGGUCGUgcaGGGCG-Cu -3'
miRNA:   3'- gCuuCCUGG------CCCCUAGCAg--CUUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.