miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 125152 0.69 0.92488
Target:  5'- gCGggGGccCCGGGGG-CGggCGGACGGu -3'
miRNA:   3'- -GCuuCCu-GGCCCCUaGCa-GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 24707 0.69 0.92488
Target:  5'- -cGAGGACgCGGGcGAgggagacgcggCGUCGAgaGCGACg -3'
miRNA:   3'- gcUUCCUG-GCCC-CUa----------GCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 11567 0.69 0.929981
Target:  5'- aCGAGGGcuaCGGGGAgca-CGAGCGGCc -3'
miRNA:   3'- -GCUUCCug-GCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 220786 0.69 0.929981
Target:  5'- ---uGGACCugcuGGGGAUCGUCcu-CGACc -3'
miRNA:   3'- gcuuCCUGG----CCCCUAGCAGcuuGCUG- -5'
9117 5' -55 NC_002512.2 + 160719 0.69 0.929981
Target:  5'- gGggGGACauCGGGGGggauuUCGggggGAACGGCg -3'
miRNA:   3'- gCuuCCUG--GCCCCU-----AGCag--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 212518 0.69 0.93196
Target:  5'- ---cGGACCacgauccgauguucGGGAUCGUCGAcggggACGACg -3'
miRNA:   3'- gcuuCCUGGc-------------CCCUAGCAGCU-----UGCUG- -5'
9117 5' -55 NC_002512.2 + 29752 0.68 0.934861
Target:  5'- gCGAGGGGgcCCGGcGAUCGaCGcGACGGCg -3'
miRNA:   3'- -GCUUCCU--GGCCcCUAGCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 74918 0.68 0.934861
Target:  5'- gCGGAGGcCCGGaggcGGAUCG-CGGACcGCg -3'
miRNA:   3'- -GCUUCCuGGCC----CCUAGCaGCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 75022 0.68 0.934861
Target:  5'- cCGAucgAGGGCCGGGGA-CGaggGGACGcACg -3'
miRNA:   3'- -GCU---UCCUGGCCCCUaGCag-CUUGC-UG- -5'
9117 5' -55 NC_002512.2 + 127827 0.68 0.934861
Target:  5'- ---cGGcuCCGGGaGGUCGUCG-GCGGCg -3'
miRNA:   3'- gcuuCCu-GGCCC-CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 150039 0.68 0.934861
Target:  5'- aCGAgGGGGCCGGGGA-CGaCgGGGCGGg -3'
miRNA:   3'- -GCU-UCCUGGCCCCUaGCaG-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 122012 0.68 0.936281
Target:  5'- gGAGGGGCCGGaggcggcGGAUCGgCGcucgcgcacgcccggGGCGGCg -3'
miRNA:   3'- gCUUCCUGGCC-------CCUAGCaGC---------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 128829 0.68 0.939519
Target:  5'- uCGAcgccGGGuucGCCGGGGAgg--UGAACGACa -3'
miRNA:   3'- -GCU----UCC---UGGCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 108373 0.68 0.939519
Target:  5'- uGggGGAUCGGGaGggCGggGGGCGAg -3'
miRNA:   3'- gCuuCCUGGCCC-CuaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 205749 0.68 0.939519
Target:  5'- aGGuAGGGCCGGGG--UGUCGcGCGcACg -3'
miRNA:   3'- gCU-UCCUGGCCCCuaGCAGCuUGC-UG- -5'
9117 5' -55 NC_002512.2 + 91802 0.68 0.939519
Target:  5'- uGGAGGACuCGGuGGGUCGUUccugcaGGACcuGACg -3'
miRNA:   3'- gCUUCCUG-GCC-CCUAGCAG------CUUG--CUG- -5'
9117 5' -55 NC_002512.2 + 150575 0.68 0.939519
Target:  5'- aGGAGGAgCGGGGcgCG--GGACGAa -3'
miRNA:   3'- gCUUCCUgGCCCCuaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 204632 0.68 0.939519
Target:  5'- aCGAAGGGgaCGGGGAcCG--GGACGGCg -3'
miRNA:   3'- -GCUUCCUg-GCCCCUaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 133284 0.68 0.939519
Target:  5'- gCGAuugAGGGCgaGGGGAUCaUCGAA-GACg -3'
miRNA:   3'- -GCU---UCCUGg-CCCCUAGcAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 87258 0.68 0.943957
Target:  5'- gCGAGGGGucuCCGGGGAgcgaacacgcggUCGUgGgGugGACg -3'
miRNA:   3'- -GCUUCCU---GGCCCCU------------AGCAgC-UugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.