miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 115729 0.72 0.788943
Target:  5'- aGGAGGACCGGgcccGGGUCGUCcucugcCGGCu -3'
miRNA:   3'- gCUUCCUGGCC----CCUAGCAGcuu---GCUG- -5'
9117 5' -55 NC_002512.2 + 116894 0.74 0.686012
Target:  5'- gCGGcGGGGCCGGGGcgggcUCcUCGGACGGCg -3'
miRNA:   3'- -GCU-UCCUGGCCCCu----AGcAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 118135 0.68 0.952181
Target:  5'- gGAGGGGgCGGGGG-CGgaaccgCGAcaugGCGACc -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCa-----GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 118295 0.7 0.876197
Target:  5'- cCGGAGGAagauCCGGGccGAgcgCG-CGGACGACg -3'
miRNA:   3'- -GCUUCCU----GGCCC--CUa--GCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 118425 0.75 0.636911
Target:  5'- uGAAGGGCCGGGcGA-CGUCccuGGACGAg -3'
miRNA:   3'- gCUUCCUGGCCC-CUaGCAG---CUUGCUg -5'
9117 5' -55 NC_002512.2 + 119099 0.65 0.984911
Target:  5'- gCGgcGGACCuGGuGGG-CGUCGuguaccGGCGGCg -3'
miRNA:   3'- -GCuuCCUGG-CC-CCUaGCAGC------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 119217 0.66 0.974467
Target:  5'- gCGAgcaccAGGACCGGcugcccgCgGUCGAGCGGCg -3'
miRNA:   3'- -GCU-----UCCUGGCCccua---G-CAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 120628 0.67 0.961937
Target:  5'- gGGAGGcggcgggacgggacGCCGGGGG-CG-CGGACGGa -3'
miRNA:   3'- gCUUCC--------------UGGCCCCUaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 121041 0.65 0.984911
Target:  5'- -cGAGGACUcGGaGUCGUCGGACG-Cu -3'
miRNA:   3'- gcUUCCUGGcCCcUAGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 121882 0.67 0.971866
Target:  5'- gGGAGGuCgCGGGGGaCGcUCG-GCGACg -3'
miRNA:   3'- gCUUCCuG-GCCCCUaGC-AGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 122012 0.68 0.936281
Target:  5'- gGAGGGGCCGGaggcggcGGAUCGgCGcucgcgcacgcccggGGCGGCg -3'
miRNA:   3'- gCUUCCUGGCC-------CCUAGCaGC---------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 123557 0.68 0.948177
Target:  5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3'
miRNA:   3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 123708 0.67 0.971866
Target:  5'- cCGAAGGACCcGGcGUCGcCGuacgccuACGGCa -3'
miRNA:   3'- -GCUUCCUGGcCCcUAGCaGCu------UGCUG- -5'
9117 5' -55 NC_002512.2 + 124570 0.7 0.876197
Target:  5'- gGAGGaGGCCcGGGA-CGUCaaGAGCGACg -3'
miRNA:   3'- gCUUC-CUGGcCCCUaGCAG--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 124789 0.7 0.876197
Target:  5'- --cGGGAcCCGGGGAgacaCGUCGAccCGACc -3'
miRNA:   3'- gcuUCCU-GGCCCCUa---GCAGCUu-GCUG- -5'
9117 5' -55 NC_002512.2 + 125152 0.69 0.92488
Target:  5'- gCGggGGccCCGGGGG-CGggCGGACGGu -3'
miRNA:   3'- -GCuuCCu-GGCCCCUaGCa-GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 126248 0.67 0.96908
Target:  5'- aGGAGGGCCGGGuGUC--CGAAgcCGACc -3'
miRNA:   3'- gCUUCCUGGCCCcUAGcaGCUU--GCUG- -5'
9117 5' -55 NC_002512.2 + 127639 0.71 0.846902
Target:  5'- gCGAaaGGGAUCGGG--UCGcUCGGACGGCc -3'
miRNA:   3'- -GCU--UCCUGGCCCcuAGC-AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 127827 0.68 0.934861
Target:  5'- ---cGGcuCCGGGaGGUCGUCG-GCGGCg -3'
miRNA:   3'- gcuuCCu-GGCCC-CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 128053 0.69 0.919557
Target:  5'- uGgcGGAgauCCGGaGGAUCGUC--GCGGCg -3'
miRNA:   3'- gCuuCCU---GGCC-CCUAGCAGcuUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.