miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 118135 0.68 0.952181
Target:  5'- gGAGGGGgCGGGGG-CGgaaccgCGAcaugGCGACc -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCa-----GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 134286 0.68 0.952181
Target:  5'- gCGggGucCCGGaGGAUCGUCuucGAgGACg -3'
miRNA:   3'- -GCuuCcuGGCC-CCUAGCAGc--UUgCUG- -5'
9117 5' -55 NC_002512.2 + 133851 0.68 0.955602
Target:  5'- cCGGAGGACaccgaggacguccUGGGGcggcUCGagGAGCGGCu -3'
miRNA:   3'- -GCUUCCUG-------------GCCCCu---AGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 128727 0.68 0.955972
Target:  5'- uGGAGG-CUGGGaGA-CGgCGGACGGCg -3'
miRNA:   3'- gCUUCCuGGCCC-CUaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 224087 0.68 0.955972
Target:  5'- aCGGAGGACCucagGGGGAccgUGUCGGucguggUGACc -3'
miRNA:   3'- -GCUUCCUGG----CCCCUa--GCAGCUu-----GCUG- -5'
9117 5' -55 NC_002512.2 + 226688 0.68 0.952181
Target:  5'- gCGccGGGCCGucgcccgcGGcGG-CGUCGAGCGACg -3'
miRNA:   3'- -GCuuCCUGGC--------CC-CUaGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 221294 0.68 0.952181
Target:  5'- gGggGaGGCCGGGGucggCGggGAGCGGg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 96750 0.68 0.948177
Target:  5'- aCGAGcGAgCGGGGcccCGUCcGAGCGGCg -3'
miRNA:   3'- -GCUUcCUgGCCCCua-GCAG-CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 123557 0.68 0.948177
Target:  5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3'
miRNA:   3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 204632 0.68 0.939519
Target:  5'- aCGAAGGGgaCGGGGAcCG--GGACGGCg -3'
miRNA:   3'- -GCUUCCUg-GCCCCUaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 133284 0.68 0.939519
Target:  5'- gCGAuugAGGGCgaGGGGAUCaUCGAA-GACg -3'
miRNA:   3'- -GCU---UCCUGg-CCCCUAGcAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 91802 0.68 0.939519
Target:  5'- uGGAGGACuCGGuGGGUCGUUccugcaGGACcuGACg -3'
miRNA:   3'- gCUUCCUG-GCC-CCUAGCAG------CUUG--CUG- -5'
9117 5' -55 NC_002512.2 + 205749 0.68 0.939519
Target:  5'- aGGuAGGGCCGGGG--UGUCGcGCGcACg -3'
miRNA:   3'- gCU-UCCUGGCCCCuaGCAGCuUGC-UG- -5'
9117 5' -55 NC_002512.2 + 150575 0.68 0.939519
Target:  5'- aGGAGGAgCGGGGcgCG--GGACGAa -3'
miRNA:   3'- gCUUCCUgGCCCCuaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 127827 0.68 0.934861
Target:  5'- ---cGGcuCCGGGaGGUCGUCG-GCGGCg -3'
miRNA:   3'- gcuuCCu-GGCCC-CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 150039 0.68 0.934861
Target:  5'- aCGAgGGGGCCGGGGA-CGaCgGGGCGGg -3'
miRNA:   3'- -GCU-UCCUGGCCCCUaGCaG-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 195221 0.67 0.959553
Target:  5'- uGAGGGacgGCCGGaGGUUGacuUUGAACGACg -3'
miRNA:   3'- gCUUCC---UGGCCcCUAGC---AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 15556 0.67 0.959553
Target:  5'- uGAGGaGGCCGGa-GUCGUCGGccugcucguGCGGCa -3'
miRNA:   3'- gCUUC-CUGGCCccUAGCAGCU---------UGCUG- -5'
9117 5' -55 NC_002512.2 + 80707 0.67 0.959553
Target:  5'- cCGggGGGCgaGGGcGcgCGggcccgCGGGCGGCa -3'
miRNA:   3'- -GCuuCCUGg-CCC-CuaGCa-----GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 140992 0.67 0.959553
Target:  5'- uCGggGGGCaCGGGGGggagcgCGgggaGGACGGg -3'
miRNA:   3'- -GCuuCCUG-GCCCCUa-----GCag--CUUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.