miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9119 3' -56.6 NC_002512.2 + 94837 0.66 0.934856
Target:  5'- cAGGCagGGGCUGUAcGcGUCAGACgGGc -3'
miRNA:   3'- uUCUGg-CUCGACAU-C-CAGUCUGgCCa -5'
9119 3' -56.6 NC_002512.2 + 159558 0.66 0.93437
Target:  5'- uGGGCCGGGaucggccUUGUugacGGGUCAGuCCGGa -3'
miRNA:   3'- uUCUGGCUC-------GACA----UCCAGUCuGGCCa -5'
9119 3' -56.6 NC_002512.2 + 171245 0.66 0.929891
Target:  5'- gGAGACgGAGCUGaGGGUC--ACCGa- -3'
miRNA:   3'- -UUCUGgCUCGACaUCCAGucUGGCca -5'
9119 3' -56.6 NC_002512.2 + 3762 0.66 0.923093
Target:  5'- gAAGugCGAGCccgAGGagacggacccggagUCGGACCGGa -3'
miRNA:   3'- -UUCugGCUCGacaUCC--------------AGUCUGGCCa -5'
9119 3' -56.6 NC_002512.2 + 205735 0.66 0.919272
Target:  5'- cGGGGUCGGGggGUAGGUaGGGCCGGg -3'
miRNA:   3'- -UUCUGGCUCgaCAUCCAgUCUGGCCa -5'
9119 3' -56.6 NC_002512.2 + 44817 0.66 0.919272
Target:  5'- -cGGCCGAGCUcccGGUCgAGGcCCGGg -3'
miRNA:   3'- uuCUGGCUCGAcauCCAG-UCU-GGCCa -5'
9119 3' -56.6 NC_002512.2 + 57626 0.66 0.919272
Target:  5'- -cGACCGAGCgGgcgugAGGcgagCAGACCGa- -3'
miRNA:   3'- uuCUGGCUCGaCa----UCCa---GUCUGGCca -5'
9119 3' -56.6 NC_002512.2 + 6338 0.67 0.901631
Target:  5'- gGGGACCGGGCgcgGGGccggCGGGCCGcGg -3'
miRNA:   3'- -UUCUGGCUCGacaUCCa---GUCUGGC-Ca -5'
9119 3' -56.6 NC_002512.2 + 88477 0.67 0.901008
Target:  5'- cAGACCGcGgUGUGGGUCgaucccgAGugCGGg -3'
miRNA:   3'- uUCUGGCuCgACAUCCAG-------UCugGCCa -5'
9119 3' -56.6 NC_002512.2 + 135774 0.67 0.888749
Target:  5'- -uGGCCGAcgagagGCUGgcggAGGagUCGGACCGGc -3'
miRNA:   3'- uuCUGGCU------CGACa---UCC--AGUCUGGCCa -5'
9119 3' -56.6 NC_002512.2 + 215630 0.68 0.87429
Target:  5'- -uGGCCGAGCUcuucgccGUGGGgcugCGGGCCGu- -3'
miRNA:   3'- uuCUGGCUCGA-------CAUCCa---GUCUGGCca -5'
9119 3' -56.6 NC_002512.2 + 205370 0.68 0.860416
Target:  5'- -uGACCGGGaaGgcGGUCAGGCCcaGGa -3'
miRNA:   3'- uuCUGGCUCgaCauCCAGUCUGG--CCa -5'
9119 3' -56.6 NC_002512.2 + 220322 0.69 0.828925
Target:  5'- gGGGGCCGGGCUccGGG--GGGCCGGa -3'
miRNA:   3'- -UUCUGGCUCGAcaUCCagUCUGGCCa -5'
9119 3' -56.6 NC_002512.2 + 16095 0.69 0.828925
Target:  5'- cGGGCCGAGC-GUcccAGcGUCAGcaGCCGGUu -3'
miRNA:   3'- uUCUGGCUCGaCA---UC-CAGUC--UGGCCA- -5'
9119 3' -56.6 NC_002512.2 + 75344 0.69 0.794691
Target:  5'- -cGACCGAgGCgg-AGGcggCGGACCGGUa -3'
miRNA:   3'- uuCUGGCU-CGacaUCCa--GUCUGGCCA- -5'
9119 3' -56.6 NC_002512.2 + 13617 0.7 0.758205
Target:  5'- -cGACCGAGCUGgcGGUgCGGG-CGGc -3'
miRNA:   3'- uuCUGGCUCGACauCCA-GUCUgGCCa -5'
9119 3' -56.6 NC_002512.2 + 107386 0.7 0.748794
Target:  5'- cAGACCGAGaccgagAGGuUCAGGCCGGc -3'
miRNA:   3'- uUCUGGCUCgaca--UCC-AGUCUGGCCa -5'
9119 3' -56.6 NC_002512.2 + 100911 0.71 0.729687
Target:  5'- gAAGGCCcGGCgGUAGGaagaCAGGCCGGa -3'
miRNA:   3'- -UUCUGGcUCGaCAUCCa---GUCUGGCCa -5'
9119 3' -56.6 NC_002512.2 + 123449 0.72 0.670696
Target:  5'- cGGACCGAccGCUGguucGGGUCGGACaacgCGGUg -3'
miRNA:   3'- uUCUGGCU--CGACa---UCCAGUCUG----GCCA- -5'
9119 3' -56.6 NC_002512.2 + 57008 0.73 0.610605
Target:  5'- -cGGCCGGGUcGgcGGUCuGACCGGg -3'
miRNA:   3'- uuCUGGCUCGaCauCCAGuCUGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.