miRNA display CGI


Results 21 - 40 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 222281 0.66 0.580349
Target:  5'- cUGCuCGGGCGCUaccucuacgaccgcuGccGCCGgaggcgguaccggaGGCUGCGGCg -3'
miRNA:   3'- -ACGuGCCCGUGG---------------U--CGGC--------------CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 7758 0.66 0.579422
Target:  5'- aGC-CgGGGCGgUAGUC-GGCCGCGGa -3'
miRNA:   3'- aCGuG-CCCGUgGUCGGcCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 97396 0.66 0.579422
Target:  5'- gGgGCGGGCGCgacgacgcggaGGCCGGGgagagaCGCGcGCu -3'
miRNA:   3'- aCgUGCCCGUGg----------UCGGCCCg-----GCGC-CG- -5'
9120 3' -66 NC_002512.2 + 125004 0.66 0.579422
Target:  5'- gUGCAUcggggccaGGGaCGCCcGCgGGGCCGaGGUc -3'
miRNA:   3'- -ACGUG--------CCC-GUGGuCGgCCCGGCgCCG- -5'
9120 3' -66 NC_002512.2 + 130660 0.66 0.579422
Target:  5'- cUGCGCgGGGCucuccgaggACCGGgaCGGGCUGCucguGGUg -3'
miRNA:   3'- -ACGUG-CCCG---------UGGUCg-GCCCGGCG----CCG- -5'
9120 3' -66 NC_002512.2 + 161516 0.66 0.579422
Target:  5'- cUGCGCGGacgGCACC-GCCGaGCC-CGGg -3'
miRNA:   3'- -ACGUGCC---CGUGGuCGGCcCGGcGCCg -5'
9120 3' -66 NC_002512.2 + 196293 0.66 0.579422
Target:  5'- cGCugauGCGGGUGaggacCCAGC--GGCCGCGGUu -3'
miRNA:   3'- aCG----UGCCCGU-----GGUCGgcCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 81990 0.66 0.579422
Target:  5'- gGCGgGGGCGucUCGGggGcGGUCGCGGCg -3'
miRNA:   3'- aCGUgCCCGU--GGUCggC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 138033 0.66 0.579422
Target:  5'- gGCcucGgGGGCAUgAGCCGGGaCUGgucgacggaCGGCg -3'
miRNA:   3'- aCG---UgCCCGUGgUCGGCCC-GGC---------GCCG- -5'
9120 3' -66 NC_002512.2 + 2211 0.66 0.578496
Target:  5'- uUGCGCaGcGuCGCCAGCCGcGCUucgugucucgccuGCGGCa -3'
miRNA:   3'- -ACGUGcC-C-GUGGUCGGCcCGG-------------CGCCG- -5'
9120 3' -66 NC_002512.2 + 152691 0.66 0.578496
Target:  5'- gGC-CGGucucgucGCGuccCCGGUCGGGgUGCGGCg -3'
miRNA:   3'- aCGuGCC-------CGU---GGUCGGCCCgGCGCCG- -5'
9120 3' -66 NC_002512.2 + 124256 0.66 0.578496
Target:  5'- gGC-CGGGUcucggagACCgacgacGGCCGGuGCCuCGGCg -3'
miRNA:   3'- aCGuGCCCG-------UGG------UCGGCC-CGGcGCCG- -5'
9120 3' -66 NC_002512.2 + 6933 0.66 0.578496
Target:  5'- gUGCACGacgcagcGGUagagGCCGGCCaGGUCGuUGGCc -3'
miRNA:   3'- -ACGUGC-------CCG----UGGUCGGcCCGGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 110204 0.66 0.57757
Target:  5'- cGCAgGGGUGCgGGUgucgcuuaaugaGGGCCGCcGCg -3'
miRNA:   3'- aCGUgCCCGUGgUCGg-----------CCCGGCGcCG- -5'
9120 3' -66 NC_002512.2 + 114029 0.66 0.576645
Target:  5'- gGCAcCGGGCGCgguggacguagaGGgCGGGCCcggaacaGCGGUa -3'
miRNA:   3'- aCGU-GCCCGUGg-----------UCgGCCCGG-------CGCCG- -5'
9120 3' -66 NC_002512.2 + 7020 0.66 0.57387
Target:  5'- cGCA-GGGC-CUuGCCGGGCuCgucguucgggacgaaGCGGCa -3'
miRNA:   3'- aCGUgCCCGuGGuCGGCCCG-G---------------CGCCG- -5'
9120 3' -66 NC_002512.2 + 136588 0.66 0.570176
Target:  5'- gUGCGCGGGUuggacgcguACaGGUagCGGGCCGCGc- -3'
miRNA:   3'- -ACGUGCCCG---------UGgUCG--GCCCGGCGCcg -5'
9120 3' -66 NC_002512.2 + 111708 0.66 0.570176
Target:  5'- aGCAUGGGCugUagaAGCuCGGGuuGUGu- -3'
miRNA:   3'- aCGUGCCCGugG---UCG-GCCCggCGCcg -5'
9120 3' -66 NC_002512.2 + 227607 0.66 0.570176
Target:  5'- cGCAgCGGcCGgaGGgCGGGCgGCGGCg -3'
miRNA:   3'- aCGU-GCCcGUggUCgGCCCGgCGCCG- -5'
9120 3' -66 NC_002512.2 + 110564 0.66 0.570176
Target:  5'- cGCGCGGGagguCCuGCCGGGUCa-GGa -3'
miRNA:   3'- aCGUGCCCgu--GGuCGGCCCGGcgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.