Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9121 | 5' | -55.9 | NC_002512.2 | + | 72955 | 0.66 | 0.948279 |
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Target: 5'- cAGGGUgGCGaccGUgGGcuccuUCUUGACGGCCUUg -3' miRNA: 3'- -UCCCA-CGU---CAgCU-----AGAGCUGCUGGAG- -5' |
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| 9121 | 5' | -55.9 | NC_002512.2 | + | 106635 | 0.66 | 0.952311 |
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Target: 5'- gGGGGUaGCGG-CGccggCUCGGCGAguaguCCUCc -3' miRNA: 3'- -UCCCA-CGUCaGCua--GAGCUGCU-----GGAG- -5' |
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| 9121 | 5' | -55.9 | NC_002512.2 | + | 9994 | 0.66 | 0.952311 |
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Target: 5'- gAGGaGgGCGGUCGGcucgUCUcCGAcccCGGCCUCg -3' miRNA: 3'- -UCC-CaCGUCAGCU----AGA-GCU---GCUGGAG- -5' |
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| 9121 | 5' | -55.9 | NC_002512.2 | + | 16832 | 0.66 | 0.958669 |
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Target: 5'- cGGGGcuggGCAGggCGAUCUCGaucccccgcagccgGCGgacgcACCUCg -3' miRNA: 3'- -UCCCa---CGUCa-GCUAGAGC--------------UGC-----UGGAG- -5' |
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| 9121 | 5' | -55.9 | NC_002512.2 | + | 19356 | 0.66 | 0.959728 |
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Target: 5'- ---aUGCcggaccGUCGGgggCUCGGCGGCCUCg -3' miRNA: 3'- ucccACGu-----CAGCUa--GAGCUGCUGGAG- -5' |
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| 9121 | 5' | -55.9 | NC_002512.2 | + | 136644 | 0.66 | 0.959728 |
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Target: 5'- cAGGG-GCAG-CGA-CUCGAUGGCgUa -3' miRNA: 3'- -UCCCaCGUCaGCUaGAGCUGCUGgAg -5' |
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| 9121 | 5' | -55.9 | NC_002512.2 | + | 123234 | 0.66 | 0.963121 |
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Target: 5'- --aGUGCGGgcucgacuucuUCGAgCUCGACGACCg- -3' miRNA: 3'- uccCACGUC-----------AGCUaGAGCUGCUGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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