miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 3' -63 NC_002512.2 + 49232 0.66 0.750244
Target:  5'- gGGgccaCCgCGGCGGCCUgcCGCACCCu--- -3'
miRNA:   3'- -CCa---GG-GCCGUCGGGa-GCGUGGGcagc -5'
9122 3' -63 NC_002512.2 + 85204 0.66 0.750244
Target:  5'- gGGUCgCCGGgucgucGUCCUCGCucGCCCGgaccgCGa -3'
miRNA:   3'- -CCAG-GGCCgu----CGGGAGCG--UGGGCa----GC- -5'
9122 3' -63 NC_002512.2 + 83230 0.66 0.747583
Target:  5'- cGGUCCCGGggaAGCCUcccuccucgUCGCcGCCagcagcuggcggauCGUCGg -3'
miRNA:   3'- -CCAGGGCCg--UCGGG---------AGCG-UGG--------------GCAGC- -5'
9122 3' -63 NC_002512.2 + 65410 0.66 0.741344
Target:  5'- aGUCCUcguagcucggcgGGCGGUCgUCGCcCCCGcCGa -3'
miRNA:   3'- cCAGGG------------CCGUCGGgAGCGuGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 145736 0.66 0.741343
Target:  5'- -cUCCCGcGCGGCCa-CGCGCUC-UCGg -3'
miRNA:   3'- ccAGGGC-CGUCGGgaGCGUGGGcAGC- -5'
9122 3' -63 NC_002512.2 + 126818 0.66 0.741343
Target:  5'- -cUCCC-GUAGUCCgucccgucgUCGCGCUCGUCGc -3'
miRNA:   3'- ccAGGGcCGUCGGG---------AGCGUGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 149166 0.66 0.741343
Target:  5'- cGGUgCCGcccGCgGGCCCgCGCGCCC-UCGc -3'
miRNA:   3'- -CCAgGGC---CG-UCGGGaGCGUGGGcAGC- -5'
9122 3' -63 NC_002512.2 + 128384 0.66 0.741343
Target:  5'- cGUCgCCGGCGGCggaccccgUCUCGaGCCCGguggCGg -3'
miRNA:   3'- cCAG-GGCCGUCG--------GGAGCgUGGGCa---GC- -5'
9122 3' -63 NC_002512.2 + 3232 0.66 0.735964
Target:  5'- uGGaCCCGGCgcgucgggugacgacGGUCCgcgggcUCGguCCCGUCGc -3'
miRNA:   3'- -CCaGGGCCG---------------UCGGG------AGCguGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 4077 0.66 0.735964
Target:  5'- aGGUCCCaGGCcacccggccgcccgcGGCCCggccggCGCAgCC-UCGg -3'
miRNA:   3'- -CCAGGG-CCG---------------UCGGGa-----GCGUgGGcAGC- -5'
9122 3' -63 NC_002512.2 + 15522 0.66 0.735065
Target:  5'- uGGUCCCGGagccagaaggcgcucUGGCUCUCGCugaggagGCCggaguCGUCGg -3'
miRNA:   3'- -CCAGGGCC---------------GUCGGGAGCG-------UGG-----GCAGC- -5'
9122 3' -63 NC_002512.2 + 228815 0.66 0.732363
Target:  5'- gGGgagaCCGGCcGCCggUGCugCCGUCu -3'
miRNA:   3'- -CCag--GGCCGuCGGgaGCGugGGCAGc -5'
9122 3' -63 NC_002512.2 + 74761 0.66 0.732363
Target:  5'- gGGaCCCGGCGGCCCUUuauaUACaCGUUGc -3'
miRNA:   3'- -CCaGGGCCGUCGGGAGc---GUGgGCAGC- -5'
9122 3' -63 NC_002512.2 + 118657 0.66 0.732363
Target:  5'- -cUCCgGGC-GCCCggcCGCCCGUCa -3'
miRNA:   3'- ccAGGgCCGuCGGGagcGUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 45498 0.66 0.731461
Target:  5'- --cCCCGGCGGCggccacgCCgaaaGCGCCCG-CGg -3'
miRNA:   3'- ccaGGGCCGUCG-------GGag--CGUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 84638 0.66 0.723309
Target:  5'- cGUCCaggCGGCGGCCCaggaaguucucgUCGCGCCgG-Ca -3'
miRNA:   3'- cCAGG---GCCGUCGGG------------AGCGUGGgCaGc -5'
9122 3' -63 NC_002512.2 + 102261 0.66 0.723308
Target:  5'- gGGUCCgGGCgucguccaucucGGCUCg-GCGCgCGUCGa -3'
miRNA:   3'- -CCAGGgCCG------------UCGGGagCGUGgGCAGC- -5'
9122 3' -63 NC_002512.2 + 111403 0.66 0.723308
Target:  5'- cGcCCCGGCAGCUCggcgcCGUACUCGa-- -3'
miRNA:   3'- cCaGGGCCGUCGGGa----GCGUGGGCagc -5'
9122 3' -63 NC_002512.2 + 222608 0.66 0.723308
Target:  5'- cGGccCCCGG-GG-CCUCGCGCCCGaUCc -3'
miRNA:   3'- -CCa-GGGCCgUCgGGAGCGUGGGC-AGc -5'
9122 3' -63 NC_002512.2 + 192160 0.66 0.723308
Target:  5'- -aUCCCgcGGCcccuGCCCUCGCuguCCGUCc -3'
miRNA:   3'- ccAGGG--CCGu---CGGGAGCGug-GGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.