miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 5' -53.6 NC_002512.2 + 121345 0.66 0.992193
Target:  5'- gCCCGGCGGAccuucucCGCCGUc-GGGUCcccGGc -3'
miRNA:   3'- -GGGCUGCCU-------GCGGCAcaUCUAGaa-CC- -5'
9122 5' -53.6 NC_002512.2 + 50103 0.66 0.991671
Target:  5'- -aCGACGGAccggucgaaggaggcCGCCGUGUAcAUCUg-- -3'
miRNA:   3'- ggGCUGCCU---------------GCGGCACAUcUAGAacc -5'
9122 5' -53.6 NC_002512.2 + 11330 0.66 0.991234
Target:  5'- aCgCGACGGACGCCGgcgGGAg----- -3'
miRNA:   3'- -GgGCUGCCUGCGGCacaUCUagaacc -5'
9122 5' -53.6 NC_002512.2 + 98568 0.66 0.991234
Target:  5'- aUCCGGCGGGCGCCucgGgcggcGGGUCg--- -3'
miRNA:   3'- -GGGCUGCCUGCGGca-Ca----UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 104340 0.66 0.991234
Target:  5'- uUCCGucgguCGGGCGgCGgcucgcuugGUGGAUCggUGGg -3'
miRNA:   3'- -GGGCu----GCCUGCgGCa--------CAUCUAGa-ACC- -5'
9122 5' -53.6 NC_002512.2 + 155385 0.66 0.991234
Target:  5'- -gCGGCGG-CGCCGgcgGgcGAUCgcGGa -3'
miRNA:   3'- ggGCUGCCuGCGGCa--CauCUAGaaCC- -5'
9122 5' -53.6 NC_002512.2 + 203018 0.66 0.991234
Target:  5'- aCCGGCGuGAUGCCccagaucaucGUGaucaGGAUCUUGa -3'
miRNA:   3'- gGGCUGC-CUGCGG----------CACa---UCUAGAACc -5'
9122 5' -53.6 NC_002512.2 + 162550 0.66 0.990061
Target:  5'- aCCGACuGGcuAUGCCGUGUggggAGAUCg--- -3'
miRNA:   3'- gGGCUG-CC--UGCGGCACA----UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 130094 0.66 0.989687
Target:  5'- aCCCGACGGccgagucgaagggcGCGCCcuugaggagGUAGuugaugcUCUUGGa -3'
miRNA:   3'- -GGGCUGCC--------------UGCGGca-------CAUCu------AGAACC- -5'
9122 5' -53.6 NC_002512.2 + 134214 0.67 0.987351
Target:  5'- gCCCGGCGGACGCgCGcucacgAGAggCUgugccgGGg -3'
miRNA:   3'- -GGGCUGCCUGCG-GCaca---UCUa-GAa-----CC- -5'
9122 5' -53.6 NC_002512.2 + 111518 0.67 0.987351
Target:  5'- gCCGGCGGuaGCGCCcUGUcacguagagcgAGAUCUcccgGGa -3'
miRNA:   3'- gGGCUGCC--UGCGGcACA-----------UCUAGAa---CC- -5'
9122 5' -53.6 NC_002512.2 + 210538 0.67 0.985797
Target:  5'- cCCCGACGGuccggcauCGUCugGUGUacgAGGUCgUGGa -3'
miRNA:   3'- -GGGCUGCCu-------GCGG--CACA---UCUAGaACC- -5'
9122 5' -53.6 NC_002512.2 + 198091 0.67 0.985797
Target:  5'- cCCCGGCGucuccccguCGCCGaGUAGggUUUGGc -3'
miRNA:   3'- -GGGCUGCcu-------GCGGCaCAUCuaGAACC- -5'
9122 5' -53.6 NC_002512.2 + 216331 0.67 0.985797
Target:  5'- cCCCGACGcGGuCGgCGgcucGAUCUUGGu -3'
miRNA:   3'- -GGGCUGC-CU-GCgGCacauCUAGAACC- -5'
9122 5' -53.6 NC_002512.2 + 95107 0.67 0.985797
Target:  5'- gCCCGG-GGACGCgG-GUGGggCUcGGa -3'
miRNA:   3'- -GGGCUgCCUGCGgCaCAUCuaGAaCC- -5'
9122 5' -53.6 NC_002512.2 + 45524 0.67 0.985797
Target:  5'- cCCgCGGCGGGCGgCGgcGgcGA-CUUGGg -3'
miRNA:   3'- -GG-GCUGCCUGCgGCa-CauCUaGAACC- -5'
9122 5' -53.6 NC_002512.2 + 35139 0.67 0.984102
Target:  5'- uCCCGACuGGCGCCcacgGUGgAGAUCg--- -3'
miRNA:   3'- -GGGCUGcCUGCGG----CACaUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 107394 0.67 0.984102
Target:  5'- gUCCGAC-GACGCUGaGggGGAUCUucUGGa -3'
miRNA:   3'- -GGGCUGcCUGCGGCaCa-UCUAGA--ACC- -5'
9122 5' -53.6 NC_002512.2 + 130755 0.67 0.982258
Target:  5'- cCCCGACGauccgGCCGUGcgcGAUCUcuUGGa -3'
miRNA:   3'- -GGGCUGCcug--CGGCACau-CUAGA--ACC- -5'
9122 5' -53.6 NC_002512.2 + 101664 0.67 0.982258
Target:  5'- gCCG-CGGACGCCGggccGAUCUa-- -3'
miRNA:   3'- gGGCuGCCUGCGGCacauCUAGAacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.